<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11505

Description Uncharacterized protein
SequenceMADKLIICRRSWGILCSGTRRRLSANMEIAVAWCGKLNAIACASETCARIPSSNVNPPFWIPIHIFIPARPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHRRITIWTQPSQGPAHLVRDASCWQREHEWRQDIPVGKLI
Length147
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.08
Grand average of hydropathy-0.032
Instability index65.10
Isoelectric point9.14
Molecular weight16631.16
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11505
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.96|      18|      21|      93|     110|       1
---------------------------------------------------------------------------
   71-   89 (17.34/ 6.13)	...PTECAVFNVI..ADSPRdsvQ
   93-  110 (35.81/18.62)	WS.PTSCPRALLI..ANFHR...R
  114-  133 (24.80/11.17)	WTqPSQGP.AHLVrdASCWQ...R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.63|      16|      24|       8|      23|       2
---------------------------------------------------------------------------
    8-   23 (31.96/19.19)	CRRSWGILC.SGTRRRL
   34-   50 (25.68/14.21)	CGKLNAIACaSETCARI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11505 with Med16 domain of Kingdom Viridiplantae
Unable to open file!