<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11504

Description Uncharacterized protein
SequenceMNQQQSSGNTTKDPEEDPLAQSVVVDSTLKTGPDKPVSSDPVSVASGEDEVVSASDKSEDQMEDDSVNPATVFCIRLKQPRSNLRHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANSPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPAHLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSNPANSKSTFEEKFLSQQSQNSARWPNFLCVCSVFSSGSVQLHWSQWPPTQGSTTRKWFCTSKGILGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQATAKTSTSNGIPPSVNPPNWAGFAPLAAYLFSWQEYLISEAKQGKKSTDQDFNDAVLLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPTITGWRVQRWESSLQPVVIHHIFGNPSTGFGGQAPMQTVWVSKVDTSIPPTNDFKSQPAAPAGATSDSRKASDLSAEKSKRVSFDPFDLPSDVRTLARIVYSAHGGEIAISFLRGGVHIFSGPNFTPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVSSSQTKSNSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVSEPWQASGETLSSIDPEAMAVDPALVQSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGTNRNMVASPTQSSATPATSQAGQSGTTSSTGSTQMQAWVQGAIAKISSSTDGVSNSTPNPIGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRFAQRTSDANPQKPQPGAPGKMEEVNSVSVKPTTTMTRADEAQGSRAGQVVPGAKGAEEGPAGRLKMGSGNAGQGYTFEEVKVLFLILMDLCRRTAGLAHPLPVSQVGSSSIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDLGPIDDSPRLSNSIDSLDMSSSENSDVYYGTQTLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPSSTNQPNQNERETWWISRWAYGCPMCGGTWVRVV
Length1251
PositionTail
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.08
Grand average of hydropathy-0.243
Instability index44.96
Isoelectric point6.27
Molecular weight135174.44
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11504
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     357.04|     122|     245|     420|     619|       1
---------------------------------------------------------------------------
  157-  222 (66.37/ 8.41)	VQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPAhlvrdASCWqREHEWRQDI.AVVTKWLSGvSP........................................................................................
  431-  566 (201.14/120.95)	VTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPT.....ITGW.RVQRWESSLQPVVIHHIFG.NPstgfggqapmqTVWVSKVDTSIPPtnDFKSQPaAPAGATSDSRKASDL.....SAEKSKRVSF.....DPFDL.P.SDVRTLARIVYS
 1048- 1135 (89.53/ 8.31)	...................................................SSIQ.VRLHYIDG.N...........yTVLPEVVEASLGP..HMQNMP.RPRGADAAGLLLRELelhppSEEWHRRNMFggpwsDPEDLgPiDDSPRLSNSIDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     267.17|      72|     530|     286|     369|       2
---------------------------------------------------------------------------
   82-  129 (61.12/20.47)	...........................SNLRHKMSVPeLCRNFSAVAWC...GKLNAIACASETCAR..IPSSnANSPFW
  286-  363 (118.42/71.39)	RKWfctSKGILGAGPSGIMAADAIITDSGAMHVAGVP.IVNPSTIVVWEvtpGPGNGFQATAKTSTSNGIPPS.VNPPNW
  374-  430 (87.63/36.60)	FSW...QEYLISEAKQGKKSTDQDFNDAVLLHCS..P.VSNFSAYV......SPEAAAQSAATTTWGSG...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.44|      48|     568|     618|     675|       3
---------------------------------------------------------------------------
  618-  675 (73.35/69.69)	VWHdTSKDRTILKIIRVLppaVSSSQTKSNSSTWERAIAER.FWWsllvgVDWWdAVGC
 1192- 1240 (94.09/56.89)	VWK.TGLEGVWYKCIRCL...RQTSAFASPSSTNQPNQNEReTWW.....ISRW.AYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     253.96|      79|     109|     803|     904|       4
---------------------------------------------------------------------------
  803-  891 (120.02/88.01)	HFITRLRRYASFC....RTlashavTAGTGTNRNMVASPtQSSATPATSQAGQSGTTSSTGSTQMQawvQGAIAKISSSTDGVSNSTPNPIGP
  917-  999 (133.94/86.03)	HFLHRLCQLLLFCfffrRA......QQPRFAQRTSDANP.QKPQPGAPGKMEEVNSVSVKPTTTMT...RADEAQGSRAGQVVPGAKGAEEGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11504 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FAQRTSDANPQKPQPGAPGKMEEVNSVSVKPTTTMTRADEAQGSRAGQVVPGAKGAEEGPAGRLKMGSGN
2) GTGTNRNMVASPTQSSATPATSQAGQSGTTSSTGSTQ
3) MNQQQSSGNTTKDPEEDPLAQSVVVDSTLKTGPDKPVSSDPVSVASGEDEVVSASDKSEDQMEDD
940
826
1
1009
862
65










Molecular Recognition Features






MoRF SequenceStartStop




1) DPEEDPLAQSVVVDSTLKT
13
31