<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11500

Description Uncharacterized protein
SequenceMSGQFRPVVPAQQPQQFLPVAPQQFQPVPRGVAVMNAGFPQTQQPQFPQAMQHLPARPGQPGHIPPAPPAIPLPTAQPNQHVSPGASSLPQPNIQTPNNYMPGVPTSHLSSSYSFAPSSYGQAPVSHNAMAQYQPMPQLQPPSLPVGGQVGSQVNAVQQTVEQSSVSTATILAPSIQPKPNEEASTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIEFFCVTSIALKVLTGTCSATLLRDCFQSIAGFYMFIFGGTTFPMFYSKRADASTNWKEFTSPDGRKYYHNKVTNQSTWSIPEELKLAREQVEMASSKGLQTEVFARAPPPAPPVVKAVSSADTSTILTQGAASSPVPVSPVIDTNVKTVSVSESASPVAAPSSISNVDVVQTASDTITPSADVAESPEVSITVVNTVTAPMNNSSTAEGVLAQNADETVKDVVVSEKINNVLEEKAIDQETATYASKQEAKNAFKALLESANVGSDWNWDQAMRVIINDKRYGSLRTLGERKQAFNEYLGQKKKQEAEERRTKQKKAREEYRKMLEECSEVTSSMRWSKAVTMFEDDDRYKAVEREKDRKDIFENYVDELRKKDRAKAQEQRKRNILEYRQFLESCVFIKANSQWRKVQDRLEADERCSRLEKIERLEIFQEELRKAERKNRDEFRKLMEGHVSAGTLTAKTHWRDYHMMVKDSPPFMAVASNTSGSTAKDLFEDVAEELQKQYHDDKVRVKDAVKLRKISLSSTWTLEDLRSAIVEDISSPPISDVNLKLIFEELLERVKEKEEKEAKKRKRFADDFFDLLRSIKVRQEITSSSTWEDCKYLFESSQEFSSIADESICKGIYEDYITQLTEETKEKERRRKEEKHTSTPESDSENRHKRHKRDRDHRNGSRRNVDPEDLEDGEFGERESR
Length911
PositionUnknown
OrganismCorchorus olitorius
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.767
Instability index61.51
Isoelectric point6.31
Molecular weight102963.18
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11500
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     122.34|      18|      18|      72|      89|       1
---------------------------------------------------------------------------
    7-   24 (26.77/12.96)	PvVPAQQ.PQQ..FL.PVAPQQ
   54-   71 (18.16/ 6.29)	..LP.AR.PGQpgHIPPAPPAI
   72-   89 (35.01/19.33)	P.LPTAQ.PNQ..HVSPGASSL
  117-  134 (21.92/ 9.20)	P.SSYGQaPVS..H.NAMAQYQ
  135-  144 (20.49/ 8.09)	P.MPQLQ.P.......P...SL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     476.25|      64|      65|     540|     603|       2
---------------------------------------------------------------------------
  465-  525 (75.54/50.36)	..ASKQEAKN....AFKALLE...S....ANVGSDWNWDQAMRVIIND..KRYGSLR.......TL...GERKQAFNEYLGQKKKQ
  526-  593 (94.20/64.79)	EAEERRTKQKkareEYRKMLE...EC...SEVTSSMRWSKAVTMFEDD..DRYKAVE.......RE...KDRKDIFENYVDELRKK
  594-  657 (81.73/55.15)	DRAKAQEQRKrnilEYRQFLE...SC...VFIKANSQWRKVQDRLEAD..ERCSRLE.......K....IERLEIFQ...EELRKA
  658-  723 (68.01/44.54)	ER......KN..rdEFRKLMEghvSA...GTLTAKTHWRDYHMMVKDS..PPFMAVA.......SNtsgSTAKDLFEDVAEELQKQ
  727-  783 (43.71/25.75)	DKV.....RVkdavKLRK.............ISLSSTW....TL..ED..LRSAIVEdissppiSD...VNLKLIFEELLERVKEK
  784-  851 (75.86/50.61)	EEKEAK.KRKrfadDFFDLLR...SIkvrQEITSSSTWEDCKYLFESS..QEFSSIA.......DE...SICKGIYEDYITQL..T
  852-  896 (37.22/20.73)	EETKEKERRR..keE........................KHTSTPESDseNRHKRHK.......RD...RDHRNGSRRNVD.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.43|      29|      87|     183|     216|       4
---------------------------------------------------------------------------
  183-  211 (56.95/47.14)	EASTDWIEHTSANGRRYYYNKKTRQSSWE
  271-  299 (56.48/34.64)	DASTNWKEFTSPDGRKYYHNKVTNQSTWS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.04|      19|      20|     338|     356|       5
---------------------------------------------------------------------------
  311-  329 (29.43/17.53)	VEM...ASSKGLQTEVFARAPP
  338-  356 (29.31/17.43)	VSS...ADTSTILTQGAASSPV
  358-  378 (22.31/11.43)	VSPvidTNVKTVSVSESAS.PV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.81|      13|      54|      36|      48|       6
---------------------------------------------------------------------------
   36-   48 (26.63/15.05)	NAGFPQTQQPQFP
   93-  105 (26.18/14.67)	NIQTPNNYMPGVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11500 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ETKEKERRRKEEKHTSTPESDSENRHKRHKRDRDHRNGSRRNVDPEDLEDGEFGERESR
2) MSGQFRPVVPAQQPQQFLPVAPQQFQPVPRGVAVMNAGFPQTQQPQFPQAMQHLPARPGQPGHIPPAPPAIPLPTAQPNQHVSPGASSLPQPNIQTPNNYMPGVPTSH
3) PVSHNAMAQYQPMPQLQPPSLPVGGQVGSQVNAVQQ
853
1
124
911
108
159










Molecular Recognition Features






MoRF SequenceStartStop




NANANA