<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11496

Description Heat shock protein 70 family
SequenceMLTRTRNKALWLLFVFLLEFLLGIAVAADEPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTIFDVKRLIGRNFNDPEVQRDMKFLPFKIVDKDGKPYIQVKVKDEIKVFSPEEISAMILTKMKETAEAYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDEKGEEKNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKALGKLRRECERAKRALSSQHQVRIEIESLFDGVDFSESLTRARFEELNMDLFKKTLGPVKRALEDANLKKSDIHEIVLVGGSTRIPKVQQLLKDLFDGKEPSKGINPDEAVAYGAAVQGGILSGEGGEGTSDILLLDVAPLSLGIETAGGVMTKLIPRNNVIPTKKSQVFTTYQDQQTTVTIRVFEGERSLTKDCRELGKFDLTGIPPAPRGVPQIEVTFEVDANGILHVTAEDKAAKKSKSITITNDKGRLSQEEIDRMVKEAEEFAEEDRKVREKIDSRNKLESYIYSMRSTIDDKDKLADKIDSDDKEKIETTLKEALDWLDDNQNGEKEDFDEKLKEVEAVCNPVIKQVYEKSGGSSAGSQEEDEPTDEL
Length661
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.430
Instability index32.13
Isoelectric point5.07
Molecular weight73412.43
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.15|      20|      22|     105|     124|       1
---------------------------------------------------------------------------
  105-  124 (36.92/21.65)	GRNFNDPEVQRDMK.FLPFKI
  129-  149 (30.23/16.62)	GKPYIQVKVKDEIKvFSPEEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.13|      15|      27|     560|     586|       2
---------------------------------------------------------------------------
  556-  570 (24.79/18.22)	EEDRKVREKIDSRNK
  583-  597 (24.34/15.00)	DDKDKLADKIDSDDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.27|      20|      22|     407|     427|       5
---------------------------------------------------------------------------
  407-  427 (30.21/24.95)	GILSGeGGEGTSDILLLDVAP
  431-  450 (36.06/24.81)	GIETA.GGVMTKLIPRNNVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.67|      14|     357|     241|     280|       6
---------------------------------------------------------------------------
  229-  243 (21.39/35.63)	LGGGTFDVSIL...............tIDN
  257-  286 (17.28/27.95)	LGGEDFDHRVMdyfiklikkkynkdisKDN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11496 with Med37 domain of Kingdom Viridiplantae
Unable to open file!