<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11494

Description Uncharacterized protein
SequenceMTSVSLNSLPNISFDLNSKPLSSIISATEPEANGGLSVVSVSRTHSFQDTPAITLSSGLTISLSCTLPVHNALNFKMNASSTPNFPPATSWMPTTPSFPMSTGSSGTSGAPGHPTLVPSVQMIPTSAAMDSPSSAVPRPSVPISSNPAVQQQMYPTYTPLPSMAPSPQGFWMQHPPMGGFPRPPYVPYPTIYQGPFPSASSGMPLATPASDSQPPGVTPLGTSPFAQSSATTANHSSVTSATQTGLPPQGIDNRKLVHDVGTRVEAAVNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEPDKVPVQPTPVSVEQLAGTDWALVTTNDGKKYYYNNKTKISSWQIPSEVAELRKKQDSDASKEHAVPVLNVVDVVAEKGSAPVSLSAPAVSTGGRDAIPLRTPVVPGSSSALDLIKKKLQESGVPSSSSPVPVMPVPAAQELNGSREVDVKGLQSENSKDKLKDANGDGNISDSSSDSEDTDSGPSKEECIKQFKEMLKERGVAPFSKWEKELPKLLFDPRFKAIPTHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDLNTNYQTFKRKWGSDPRFEALDRKDKELLLNERVLPLKKAAEEKAQAERAAVASEFKSMLKEKGDINVNSRWSRVKDNLRDDPRYIAVKHDDREVLFNGYISELRAIEEKAERKEKAKREEEDKLKERERELRKRKEREEQEMERVRLKIRRKEAIASFQALLVETIKDPQASWTESKHKLEKDPQGRAGNPDLDPSDTEKLFREHIKMLIERCAQDFRALLAEVITPDAAAQETEEGKTVLNSWSTAKRLLKSDPRYNKMPRKEREAVWRRYAEDMLRKQKSASDQGEEKHTDSKGRSSGDLGRYSSGSRKTHERR
Length896
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-0.762
Instability index54.39
Isoelectric point8.44
Molecular weight98901.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11494
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     430.86|      64|      64|     577|     640|       1
---------------------------------------------------------------------------
  499-  566 (78.71/48.43)	QFKEMLK...erGVAPFSKWEKELPKLLFDPRF....KA....IPTHSARRSLF...EHYVKTRAEEErkEKR.AAQKA...AIEG
  567-  633 (90.86/57.12)	.FKQLLD.easeDIDLNTNYQTFKRKWGSDPRF....EA....LDRKDKELLLN...ERVLPLKKAAE..EKA.QAERA...AVAS
  634-  698 (83.45/51.82)	EFKSMLK..ekgDINVNSRWSRVKDNLRDDPRY....IA....VKHDDREVLFN...GYISEL.RAIE..EKAeRKEKA...K..R
  699-  737 (38.85/19.93)	EEEDKLK..........................ererEL....RKRKEREEQEM...ERV.RLKIRRK..E...........AIAS
  738-  806 (64.25/38.09)	.FQALLV.etikDPQ..ASWTESKHKLEKDPQG....RAgnpdLDPSDTEKLFR...EHI...KMLIE..RCA.QDFRAllaEVIT
  807-  874 (74.75/45.60)	PDAAAQEteegkTV.LNS.WSTAKRLLKSDPRY....NK....MPRKEREAVWRryaEDMLRKQKSAS..D...QGEEK...HTDS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     203.16|      41|      42|     114|     155|       2
---------------------------------------------------------------------------
   83-  113 (44.09/15.78)	PNFPPATSWM....PTT.............PSF.PMStgSSGTSGAPGH.
  114-  155 (71.72/32.98)	PTLVPSVQMI....PTSAAmDS.PSSAVPRPSV.PIS..SNPAVQQQMYP
  161-  197 (60.33/24.02)	PSMAPSPQGFwmqhP........PMGGFPRP...PYV..PYPTIYQGPFP
  204-  227 (27.02/ 7.11)	P........L....ATPAS.DSqP......PGVtPLG..TSPFAQ.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.07|      30|      91|     300|     329|       4
---------------------------------------------------------------------------
  300-  329 (54.33/28.04)	PAGFKGEPDK...VPVQPTPVSVEQLAGTDWAL
  394-  418 (40.08/18.90)	PAVSTGGRDA...IPLR.TPV....VPGSSSAL
  424-  450 (27.67/10.95)	KLQESGVPSSsspVPVMPVP.AAQELNG.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.09|      19|      49|     280|     298|       5
---------------------------------------------------------------------------
  280-  298 (35.02/21.91)	TDTGVVYYYNALTGESTYE
  332-  350 (37.07/23.57)	TNDGKKYYYNNKTKISSWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.93|      15|     212|      22|      36|       7
---------------------------------------------------------------------------
   33-   52 (19.87/10.57)	NGGLsvvsvSRTHSFQDTPA
   56-   70 (24.06/14.35)	SSGL.....TISLSCTLPVH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11494 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IKKKLQESGVPSSSSPVPVMPVPAAQELNGSREVDVKGLQSENSKDKLKDANGDGNISDSSSDSEDTDSGPSKEECIKQF
2) NFPPATSWMPTTPSFPMSTGSSGTSGAPGHPTLVPSVQMIPTSAAMDSPSSAVPRPSVPISSNPAVQQQMYPTYTPL
3) PSASSGMPLATPASDSQPPGVTPLGTSPFAQSSATTANHSSVTSATQTGLPPQGIDNRKLVHDVGTRVEAAVNEQSDVW
4) SWTESKHKLEKDPQGRAGNPDLDPSDTEKL
5) VWRRYAEDMLRKQKSASDQGEEKHTDSKGRSSGDLGRYSSGSRKTHERR
421
84
197
752
848
500
160
275
781
896










Molecular Recognition Features






MoRF SequenceStartStop




1) AVWRRYAEDMLRKQK
2) DLIKKKLQ
847
419
861
426