<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11485

Description Uncharacterized protein
SequenceMEVSLERSRIWDEVVEQTKVAKVKGIDPLFWALQVSSSLSSSEVALPSTELAHVLVNYICWDNNIPILWKFLDKALMMKIVPPLLVLALLSQRVVPCRHSHAAAYRLYLELLKRHAFTLKSQINGPEYQKIMKSIDATLHLSEIFGLQAMEPGILVVEFIFSIVWQLLDASLDDEGLLELTTERMSRWAIKSQEMEIDGHDIYDEKKIEYQERLRNFNTTMAIEIIGQFLQNKVTSRILYLARRNMPTHWVGFVESLRLLGANSAALKNSKILTSEALLELTSDSRIVLSRECKTSSLQKFHAVMAFGSLASSAGLCHGASRSDLWLPLDLALEDAMDGYLVNTTSAIEIITGLIKTLQAINGTSWHDTFLGLWIASLRLVQRERDPIEGPVPRLDTRLCMLLSITTLVVADLIEEEEGAPIDETEYGSTNHWKGKKLPRKRRDDLVSSLQVLGDYQGLLAPPQSVVSAANQAAARAMLFVSGINVGSAYFECINMKDMPMNCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGRINQLPYSVPTQAPGWSSFMKGAPLTSVMINALVSSPASSLAELEKIFEIAVNGSDDEKISAATILCGASLIRGWNIQEYTVQFITRLMSPPVPADYAGSESHLIGYAAMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVSWTLPTGEEITPHAVFSSAFALLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLLVRNSHLLSSENIHKNRNKRRLSEVASSSSPEPVFLDSFPKLKVWYRQHQRCIAATLSDLVHGTTVHQTVDGLLNMMFRKINRGSQSVTSGSSSSSGPGNEDNSLKPKLPAWDILEAIPYVVDAALTACAHGRLSPRELATGLKDLSDFLPASLATIVSYFSAEVSRGVWKPVVMNGIDWPSPAANLSSVEEHIKKILAATGVDVPRLAAGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALESLAADCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAIVQLLKSCFTATLGLNAAPISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVFRSMRDIVFITEEVVSLLMDSVKEIAYSGLQREKLEKLKTSKNGMRYGQVSLAAAMNRVKLAASLAASLVWLSGGLGLVQSLIKETLPSWFLSVHRSQREEGSGLVAMLGGYALAYFTVLCCAFAWGVDSSSSASKRRPKILGTHMEFLASALDGKISLGCDAATWRAYVSGFVSLMVGCTPTWVLEVDADVLRRLSKGLRQWNEEELALALLGIGGIGTMGGAAELIIERDL
Length1323
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.08
Grand average of hydropathy0.171
Instability index45.14
Isoelectric point6.39
Molecular weight144572.67
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11485
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.28|      37|     123|     218|     259|       1
---------------------------------------------------------------------------
  218-  259 (56.88/49.11)	NTTMAIEIIGQFLqnKVTSRILYLARRN.MPTHWVGfveSLRL
  343-  380 (61.40/38.20)	NTTSAIEIITGLI..KTLQAINGTSWHDtFLGLWIA...SLRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.18|      48|      67|     758|     805|       2
---------------------------------------------------------------------------
  700-  731 (39.10/19.75)	...............PHAVFSSAF.AlLLKLW..RFNHPP.IEHGVGD.VPT
  758-  805 (84.82/51.96)	NRNKRRLSEVASSSSPEPVFLDSF.P.KLKVW..YRQHQRCIAATLSDLVHG
  824-  874 (70.26/41.71)	NRGSQSVTSGSSSSSGPGNEDNSLkP.KLPAWdiLEAIPYVVDAALTACAHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.92|      22|     408|     543|     569|       3
---------------------------------------------------------------------------
  543-  569 (36.03/37.10)	VPTQAPGWSSfmkgaPLT.SVMINALVS
  947-  969 (35.89/22.84)	VPRLAAGGSS.....PATlPLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.13|      26|     408|     641|     677|       5
---------------------------------------------------------------------------
  477-  504 (46.51/26.97)	AMLFVsgINVGSAYFECINMKDM....P.MNCS
  643-  673 (36.62/43.93)	AMLNV..LIVGIASVDCVQIFSLhglvPqLACS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.05|      41|     130|    1029|    1070|       7
---------------------------------------------------------------------------
 1029- 1070 (65.14/42.69)	VFLHNSDAIVQ.LLKSCFTA.TLGLNAAPISSNGGVGALLGhGF
 1160- 1202 (61.91/35.66)	VWLSGGLGLVQsLIKETLPSwFLSVHRSQREEGSGLVAMLG.GY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11485 with Med33 domain of Kingdom Viridiplantae
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