<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11484

Description Putative transcription cofactor
SequenceMETVDWRTQLPPESRSRIVNKIMDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKSQNTMPNPGSNSKPPDPGSQGMQNQVHSQGQSIPIPLQSNQPQARQQMLPHNVPNNMASAGVQTSAGLQSGMPPVSGLTQNSIPNVGQNSNMQNMSGISQNSMGQGMTSNIYANQQRQMQGRQQVLPQQQQQQQQQQQQQLYHQQLQQQIMKQKIQPGNLQPSLMPSHMQQQQQNLLPTNQLQSGQQSGMQTSSVMQPSAMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQAAGPGIHQQQTMMPQQHQQPPPSQQQQQQQQQQQQQQPHMMGQQTNAANIQQNQLIGQQSSIGDMQQQRLLGQPNNLPNMQQQQQQQLMAQQSNISNMHQQQLGPQGNISGLQQQQQQQQLMGTQSGNSSMQTNQQLHMLPQSKVPLQQTQQNAPNMLPTQGQTSQQQQMMSQMQSQSSQLQQQLGLQQQPNQLQRDMAQRLQASGQASSSLLQSQNLIDQQKQLYQSQRAVPETSSTSLDSTAQTGQANGGDWQEEVYQKIKAMRDHYLPEINEMHQKISAKLEQQDSLSQPQQKSDQLEKLKIFKSMLDRIIGFLSVSKANVLPTYKDKLSSYEKQIVNFISSNRPRKPSTMQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLQSVNLQGSVPTMQNNMTGLQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVATGPLQQNPVSTSQQANISSLTSQSNLNVLQQNMNPLQSNSNMLQQQHLKQQQEQQMQLKQQYQQRQMHQQQQLMQKQQLLQQQQQQQQQQLHQQAKQQLPTQMQTHQMPQLHQVNDVNDMKMRQGMGVKPGVFQQHLPAGQRQSYPHQQLKPGSQYPISSPQLLQTASPQMPQHSSPQVDQQSLLTSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPVPGSSSLSNAANVGHQQGTGVQAVSQSLAIGTPGISASPLLAEFTGADGTHANALTTVSSKSNITEQPLERLMKAVKSMSPVALGASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMSGTKKMRRYTSAMPLNVVSSAGSMNDSFKQLTGSETSELESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDPTAAAANVDGSEGTIVKCSFSAVALSSNLKSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVSKEYEDLSVKAKSRFSISLRTLSQPMSLGEIARTWDICARAVISEHAQQSGGGSFSSKYGTWENCLSAA
Length1345
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.03
Grand average of hydropathy-0.834
Instability index76.33
Isoelectric point9.34
Molecular weight148415.52
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11484
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.12|      15|      15|     383|     397|       1
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  325-  339 (27.60/ 6.07)	QQQTMMPQQHQQPPP
  383-  397 (27.52/ 6.03)	QQQRLLGQPNNLPNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     780.20|     134|     134|     106|     239|       2
---------------------------------------------------------------------------
   54-  128 (90.56/12.78)	...........TAASSQ.SDylrrislkM..LTMETKSQNTMPNPG..SNSKPPD.PG.................S.QGM........QNQV........HSQGQ...............................................................................sIP......IPLQSN...........................Q....P...QARQQMLPHN
  129-  256 (238.82/48.13)	VPNNMASAGVQTSAGLQ.SG........M..PPVSGLTQNSIPNVG..QNSNMQNMSGISQ......NS.....MG.QGMTSNIYANQQRQM........QGRQQ....VLPQQ......................QQQQQQQQ...QQQLYHQQLQQQIMKQKIQPGNLQPS.....................LMPSH...........................M....Q...QQQQNLLPTN
  257-  409 (133.10/22.92)	QLQSGQQSGMQTSSVMQpSA........MqsTPLPGLQQN........QQSSLQ...Q.ST......QS.....ML.QQ.......HQQSVL..........RQQ....QQPQQaagpgihqqqtmmpqqhqqpppSQQQQQQQ...QQQ...QQQQPHMMGQQTNAANIQQN..........................qligqqssigdmqqqrllgqpnnlpnmQ....Q...QQQQQLMAQQ
  410-  545 (124.14/20.79)	...............................SNISNMHQQQLGPQG........NISGLQQ......QQqqqqlMGtQSGNSSMQTNQQLHMlpqskvplQQTQQnapnMLPTQ......................GQTSQQQQmmsQMQSQSSQLQQQLGLQQ.QPNQLQRDmaqrlqasGQA.SS......SLLQSQ...........................N....L...IDQQKQLYQS
  549-  667 (109.28/17.24)	VPET.SSTSLDSTA..Q.TG........Q.............ANGGdwQEEVYQKIKAMRDhylpeiNE.....MH.Q....KISAKLEQ.............QD....SLSQP......................QQKSDQLE...KLKIFKSMLDRIIGFLSVSKANVLPTykdklssyEKQ.IV......NFISSN...........................R....P.....RK......
  668-  746 (84.31/11.28)	.PSTM...........Q.QG........QlpPP.....................HM...........HS.....M............QQPQ............PQ....I..NQ......................TQSHDNQM...NPQL..............QSVNLQGS........V....PtmqnnmTGLQHN...........................SlsslPgvsTAQQTMLNSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.97|      15|      15|     826|     840|       3
---------------------------------------------------------------------------
  826-  840 (31.76/10.76)	KQQYQQRQMHQQQQL
  867-  881 (26.21/ 6.99)	PTQMQTHQMPQLHQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.89|      68|      71|    1139|    1209|       8
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 1139- 1209 (102.13/68.82)	AMPLNVVSSAGSM.NDSFKQLTGSetSELESTATSSVKRPrIEANHALL.EEIREINQRLIDTV.VDISDEDVD
 1212- 1282 (102.76/59.80)	AAAANVDGSEGTIvKCSFSAVALS..SNLKSQYMSAQMSP.IQPLRLLVpTNYPNCSPILLDKFpVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.73|      32|      86|    1004|    1039|       9
---------------------------------------------------------------------------
 1004- 1039 (49.85/38.15)	GHQQGTGVQA.VSQSL.AIGTPGISASpllaEFTGADG
 1093- 1126 (44.88/25.49)	GSAPGNGSRAaVGEDLvAMTKCRLQAR....NFITQDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.57|      11|      30|     763|     774|      12
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  763-  774 (17.17/ 9.82)	MQQvATGPLQQN
  796-  806 (21.40/ 8.50)	LQQ.NMNPLQSN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11484 with Med15 domain of Kingdom Viridiplantae
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