<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11483

Description Uncharacterized protein
SequenceMDTNNNWSNSPNPNPSPTQPTMDTVDWRSQLSLDSRKMIIAHLIKKLEKSFSFSEEKDLIGLKQIAIRFECKTFAVSTSRSDYLRRISEKMHAILEGKFKKAAQDKGNNSEPPRAGSQSMQQQNQIHSQGQIIPILTESNQSQVCQQLLPRNVQNNMASSGFQSGMPRPLSNVGGQNISGISQNSMGQGMPSHIYSMQQRPMQGVQQVRPQQQQQMIYSNNTNRPMKVASMLQQGQVPRPDMHSLQQSQQSHGNQMNSQLQSMNLQGSVPKMQSNAGQGNALCSMQHVATRPLHQNPMSASQQANISSLSSQSHNGASVRKQNMNTLQSIVASSTSQQANTSSLSSQSGVNVQQQNMNPLQSNLYELRQQYLKEKQEWQMLQSQSQQRQMQSQQYHQQVKQEFPTQEFQTHHMPQTQQMQQTHQMPQRHQIPHMQQMPQTQQHQQMNNVNDMKIRQGIGVKPGGQSYTHQQFRPGSQFQVASPKHSSPKVDQQSRLTSISKTRSPLQSANSPFVAPSPSTPLAPSPMPLESEKPVPSTSTLSDAANAGHQRGTGIHAVSGPVKISTPGISASPLLADDTHDTGSTPAVPSKSNITEQPPLERLINLVQSMSPRALHSAVSDIAQVVIMADSIAEAPPGNGSRAAIGADLGSMTSFSLIMSWDSKGKKLNSTNSEAATSGEATTGAAASDQRQPWQLQLDFKSRQKVVNRIMDSLKSYLPFSCSQGESDQLRRHSVDFEEKVYNVATSESDYLTRIAVKMLRVEEFMSFFSQLRQLDHDSRQKVVSKIMELVKRYKPIYSRPEGLDELRRISARLEEKMYNIATSLSDYVRKIVLQMLFVEVELAVMHYCSEKKEDHGIGSSQTAVKPVMGNSRTLPRQDQMKYYQFLKE
Length889
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.05
Grand average of hydropathy-0.762
Instability index68.04
Isoelectric point9.57
Molecular weight99233.58
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11483
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      89.41|      20|      34|     699|     718|       2
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  699-  717 (30.72/18.05)	........................DFKSRQKVVNRIMDSLKSY
  718-  751 (20.24/ 9.62)	L......pfscsqgesdqlrrhsvDFE..EKVYN.VATSESDY
  752-  794 (20.32/ 9.68)	LtriavkmlrveefmsffsqlrqlDHDSRQKVVSKIMELVKRY
  816-  828 (18.14/ 7.92)	.............................EKMYN.IATSLSDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.18|      21|      22|     470|     490|       3
---------------------------------------------------------------------------
  246-  272 (29.68/ 8.61)	QQSQQSHGNQMNS.QLQSmnlqgsVPKM
  278-  299 (25.19/ 6.16)	QGNALCSMQHVATrPLHQ......NPMS
  470-  490 (35.30/11.68)	QQFRPGSQFQVAS.PKHS......SPKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.96|      15|      22|     152|     170|       4
---------------------------------------------------------------------------
  152-  168 (24.70/15.65)	NVQNNMasSGFQSGMPR
  197-  211 (27.26/ 6.44)	MQQRPM..QGVQQVRPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.84|      29|      32|     301|     329|       5
---------------------------------------------------------------------------
  316-  348 (38.80/13.91)	GASVRKQNMNTLQSivasstSQQANTSSLSSQS..
  349-  373 (43.93/16.64)	GVNVQQQNMNPLQS......N....LYELRQQYLK
  374-  397 (34.10/11.41)	....EKQEWQMLQS.....qSQQRQMQ..SQQYHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.01|      33|      45|     518|     550|       6
---------------------------------------------------------------------------
  518-  550 (56.83/26.75)	PSTPLAPS........PMP.....LESEKPVPSTSTLSDAANAGHQ
  551-  581 (47.23/21.09)	RGTGIHAV........SGP.....VKISTPGISASPL..LADDTHD
  583-  624 (27.95/ 9.72)	GSTPAVPSksniteqpPLErlinlVQSMSPRALHSAVSDIAQ....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.02|      16|      36|     639|     654|       7
---------------------------------------------------------------------------
  639-  654 (27.54/21.27)	NGSRAAIG.ADLGSMTS
  672-  688 (21.47/14.80)	NSEAATSGeATTGAAAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.92|      13|     219|     212|     244|       8
---------------------------------------------------------------------------
  212-  228 (17.37/ 8.63)	QQQQMiysNNTNrPMKV
  442-  454 (24.55/14.74)	QHQQM...NNVN.DMKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.67|      15|      75|     719|     734|      10
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   74-   88 (27.76/11.80)	FAVSTSRSDYLRRIS
  720-  734 (29.91/19.24)	FSCSQGESDQLRRHS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11483 with Med15 domain of Kingdom Viridiplantae
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