<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11482

Description Putative transcription cofactor
SequenceMDTVDWRSQLSLDNRRKIMTLLFQKLEKTIPISGQRGLIELKKLAIKLEHKIFADSTSKPDYLKRISDNVRGIQIKMKKTGNNSEPPRAGSQSMQQQNQIHSQGQTIHIPQESNQSQQLLPQNVQNNMASSSFQSRMPPVSSLTQNPIPNVGGQNISGISQNLMGQGMPSHIYSIQQRPMQGVQQVASTLQQGQVPRPDMHHSMQHPPQPEYNQRQSHEKNQMNSQLQSINLQGNAGQGNALCSMQNGAPRPLHQNPASASQSQQANISSLSSQSHDGASVRKQNMNTLQSIVASTSQQANTSSLSSQSGVSVRKQNMNPLQSNPYELKQQYLKQLQEWQMLQSQSQQRQMQSQQYHQQVKQQILQSQSQQPQMQSQQYHQQVKQEFPTQEFQMHQMPQTQQHHQMNNVNDMKIRPGMGVKPEVFPQHLPAGQRQFRPGSQFQVASPKHSSPKVDQQSLITSISKPRTPLQSANSPFAVPSPSTPLAPSPMPVESEKPVPGTSTLSDAANIGYQQGTGVHAVSGPVTISTPGPGISASPLLADDTHDTASTPAVPSKSNITEQPPLERLINLVQSMSPKALHSAVSDIASVVIMADSIAESPPGNRSRVAIGADLGSMTRCQLRARKFISKDGMNGTRMRRYINAMPLE
Length649
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.03
Grand average of hydropathy-0.792
Instability index71.63
Isoelectric point9.95
Molecular weight71593.75
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11482
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.12|      21|      21|     342|     362|       1
---------------------------------------------------------------------------
  342-  362 (41.69/14.51)	LQSQSQQRQMQSQQYHQQVKQ
  365-  385 (42.44/14.90)	LQSQSQQPQMQSQQYHQQVKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     247.24|      31|      31|     261|     291|       2
---------------------------------------------------------------------------
   91-  112 (30.49/ 7.32)	SQSmQQ...QN...QIHSQ..........G.....QTIHIPQE
  114-  145 (31.73/ 7.87)	NQS.QQllpQNVqNNMASS.......SFQS...RMPPVSSLTQ
  151-  185 (33.90/ 8.83)	VGG.Q.....NI.SGISQNlmgqgmpSH.IYSIQQRPMQGVQQ
  234-  259 (38.66/10.94)	GNA.GQ...GN...ALCSM........QNGAP.RPLHQNP.AS
  261-  291 (58.37/19.68)	SQS.QQ...ANI.SSLSSQ.......SHDGASVRKQNMNTLQS
  295-  323 (54.08/17.78)	STS.QQ...ANT.SSLSSQ.......S..GVSVRKQNMNPLQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     199.63|      47|      48|     468|     514|       3
---------------------------------------------------------------------------
  468-  514 (80.64/41.87)	TPLQSANSPFAVPSPSTPLAPSPMPVES..EKPVPGT.STLSDAANIGYQ
  517-  563 (68.30/34.25)	TGVHAVSGPVTISTPGPGISASPLLADD..THDTAST.PAVPSKSNITEQ
  570-  616 (50.69/23.37)	INLVQSMSPKALHSAVSDIASVVIMADSiaESP.PGNrSRVAIGADLG..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.12|      16|      52|     388|     403|       5
---------------------------------------------------------------------------
  388-  403 (32.68/17.08)	PTQEFQM....HQMPQTQQH
  438-  457 (24.44/10.76)	PGSQFQVaspkHSSPKVDQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.60|      12|      33|      32|      43|       6
---------------------------------------------------------------------------
   32-   43 (19.53/11.38)	ISGQRGLIELKK
   54-   65 (17.07/ 9.09)	ADSTSKPDYLKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11482 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IQIKMKKTGNNSEPPRAGSQSMQQQNQIHSQGQTIHIPQESNQSQQLLPQNVQNNMASSSFQSRMPPVSSLTQNPIPNVGGQNISGISQNLMGQGMPSHIYSIQQRPMQGVQQVASTLQQGQVPRPDMHHSMQHPPQPEYNQRQSHEKNQMNSQLQSINLQGNAGQGNALCSMQNGAPRPLHQNPASASQSQQANISSLSSQSHDGASVRKQNMNTLQSIVASTSQQANTSSLSSQSGVSVRKQNMNPLQSNPYE
2) WQMLQSQSQQRQMQSQQYHQQVKQQILQSQSQQPQMQSQQYHQQVKQEFPTQEFQMHQMPQTQQHHQMNNVNDMKIRPGMGVKPEVFPQHLPAGQRQFRPGSQFQVASPKHSSPKVDQQSLITSISKPRTPLQSANSPFAVPSPSTPLAPSPMPVESEKPVPGTSTLSDAANIGYQQGTGVHAVSGPVTISTPGPGISASPLLADDTHDTASTPAVPSKSNITEQPPLERLINLV
73
339
327
573










Molecular Recognition Features






MoRF SequenceStartStop




1) RMRRYI
638
643