<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11480

Description Uncharacterized protein
SequenceMTRRNGEKRDESVAVAIDKDKGSQYALKWAVDHLMSRGQSITLLHVKVKSSNSPTGNSDDEVAKAYKQQLDNQAREVFLPFRCFCSRKDIKCIEIVLEDIDISKALIDYVSSNPIETFVLGSPSKSGFVRRFRTTDVPTNVTKGVPDYCTVYVIGKGKISSVKSATAPPPAKPPRNHPSIPNTPTTPEPAEPPLPFPAAYNPRNRGAQVDFRSPFTRPGRSPIKFESSINPDSDISFVSSGRPSTDNMLYENLEFGTPRMSTSSDQYDNRSFGSSYSGNRSIDYNSSQYDHFSSSSMESGWTSWSSQTQSVDDVEAEMRRLRQELKQTMDLYSAACKEALSAKQKANELHSWKLQEQQKIEEARLSEEAALSLAEKEKAKCRAAMEAAQAAQRIAELEAQKRINAEMKANDDKKNMALSRGPGRDLMYRRYSIEEIETATEEFSPSRKIGEGGYGPVYHCKLDHTPVAIKVLRPDAAQGQSQFHQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDRLFRRNNSPVLPWQVRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQFHMTSTAGTFCYIDPEYQQTGMLGTKSDIYSLGILLLQIITAKPPMGLTHHVERAIEKGTFAEILDPAVHDWPLEEALVFAKLSLKCAELRRKDRPDLGRVVLPELNRLRALAEDNMPYMMLGGSAGPSPVHSQASASSFQDSFTETSHSLQSQSDHSSRSRSNPSSFIGRRHLSNIE
Length778
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.07
Grand average of hydropathy-0.540
Instability index59.09
Isoelectric point7.28
Molecular weight86721.87
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11480
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.53|      15|      16|     168|     182|       1
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  168-  182 (33.13/15.19)	PPPAKPPRNHPSIPN
  187-  201 (30.40/13.38)	PEPAEPPLPFPAAYN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.79|      15|      16|     242|     256|       2
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  217-  239 (14.48/ 6.95)	RPGRSPIKFEssinpdsDISFvS
  242-  256 (27.76/22.21)	RPSTDNMLYE.......NLEF.G
  259-  273 (27.54/21.95)	RMSTSSDQYD.......NRSF.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.44|      44|      45|     329|     372|       3
---------------------------------------------------------------------------
  284-  329 (55.65/39.89)	..YNSSQYDHFSSSSMESGWTSWSSQTQSvddvEAE.MRRLRQE...LKQTM
  330-  373 (68.86/51.26)	DLYSAACKEALSAKQKANELHSWKLQEQQ....KIE.EARLSEE...AALSL
  375-  419 (44.93/30.67)	EKEKAKCRAAMEAAQAAQRIA..ELEAQK....RINaEMKANDDkknMALS.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.78|      67|     467|      88|     161|       4
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   88-  161 (104.29/96.62)	KDIKCIEIVLEDIDISKalidyVSSNPIETFVlgSPSKSGFVRRFRTTDVPTNVTKGVPDYCTVYVIG.KGKISS
  564-  631 (112.49/83.84)	RDLKPANILLDRNYVSK.....ISDVGLARLV..PPSVADSVTQFHMTSTAGTFCYIDPEYQQTGMLGtKSDIYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.48|      54|     166|     506|     563|       5
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  506-  563 (91.07/82.06)	PEYGCLVYeymANGSLDDRLFRRNNSP.....VLPWQVRFRIAAEIATGLLFLHQTK.PEPlVH
  673-  732 (86.41/63.54)	PLEEALVF...AKLSLKCAELRRKDRPdlgrvVLPELNRLRALAEDNMPYMMLGGSAgPSP.VH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11480 with Med32 domain of Kingdom Viridiplantae
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