<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11477

Description Uncharacterized protein
SequenceMELEEERSPSPVVWVAEMAKCIASHGLGLPSTELGQVLVSHLFRTNTKTKTNSLWKFLHHALSSHLLSPLHVLSLLTCRVIPYRQSHPEAFRLYVELLRRFALSFDPSIPDDSKHKIVESVNVTLQLSQNYSAQVVELGHAFVLFFFTIITALIDCALDDWGLQMASLDVRNGAVATGSMDYQHMDIDPGGACHIERKQCQEHMRSINPFLAIEIVGQLTESIRAMVLLRLVYLNMPEKFNGLLHKLHFVEANNLVSSSLKSANQNLARLFANVKQIPSFEYQLKKHRFIGMLMDVGSCKPVSCCNFGPIQSACWVPFDIYMENAMDGKQLSVKSAIVLLTETIYTLRVFNRASWKETFLSLWLSALRLVQRERDPLEGPIPHLEARLCILLSIVPLAIANVFEDEAKLHSFQESRYEEGIDGKGYDATKQGLISALQLLGSFSGLLCPPASILAAANTAAAKAASYVSKNHMDGVDSSSAIETCLIAGGNMRHLIVEACIARNLIDSSAYYWHGYVSSSTVSSEPLPIKKSPWSSFMEGAPLSGHLVNSLLTTPASSLAEIEKLYHIALSGPAEEKPVAAKILCGASLSNGWNVQEHVVHFVVKLLSPPVPPGYCEPMNHLIDHMPMLSAVLFGASSIDTVHILSLHGVIPEVAAALMPLCETFGSLVPTPCSKSSTRDEPSSYLIFSAAFLFLLRLWKFYKPPLELGLTGGAMGGELTLEYLLLLRNSHIASQNPAAEDETDSNMDQFQFASDKPVYIDYFPKLRAWYCQNRSCIASTLSGLCSGNPVHEVANKIVSMIYWKMTKSGASQGNSSTPSTSSNCGSPISNAEDVYQIPILPAWEVLEAIPFVLEAILTACAYGRLSSRDLTTGLRDLVDFLPASLAVIISYFSAEVTRGIWKPVPMNGTDWPSPSAILPLIESEMKQILAAAGVNVPSCSFGTSLMLPLPIAALVSLTITFKLNKSLEYIHAVVGPALENCASSCPWPSIPIIGSLWAQKIHRWHNFIVVSCSRSVFRQNKEAIAQLLRSCFASFVGSLHNSTLSTNQSSVNGLLGSIIATAGDCPSVAPGFLYLRSCRTIQDIQYVNDVIIGLVAEYARESASRWTSKDTRSLKSGNSSLFFAASIAREVAMLGASLLCVSGGFQLVLELYRETIPTWLLSSKGDKLGKVSSVACIMEGYAMAYLLVMSGSFAWGVGAKTPSSATSKRACMVGVHMDFLARVLEGQISLGCNPATWRAYVSCLVGLIVSCAPAWIQQVKLETLRKLASGLRGWDEYELALSLLERGGVPAFGSVAELVNVIN
Length1303
PositionTail
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.08
Grand average of hydropathy0.214
Instability index46.11
Isoelectric point6.47
Molecular weight142108.87
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11477
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.54|      48|      74|     893|     940|       1
---------------------------------------------------------------------------
    8-   31 (26.38/ 9.11)	.......................SPSPVVWV..AEMAK.CIASHGLGLPS..
  893-  940 (88.47/47.57)	SAEVTRGIWKPV...PMNGTDWPSPSAILPLIESEMKQ.ILAAAGVNVPSCS
  966- 1013 (74.70/39.05)	SLEYIHAVVGPAlenCASSCPWPS....IPIIGSLWAQkIHRWHNFIVVSCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     203.46|      46|      46|     578|     623|       2
---------------------------------------------------------------------------
  526-  574 (56.57/25.62)	PLPIKKSPWSSFMEGAPLSGHLVN...SLLTTPASSlAEIEKLYHIalsgpA
  578-  623 (82.06/40.12)	PVAAKILCGASLSNGWNVQEHVVHFVVKLLSPPVPP.GYCEPMNHL.....I
  627-  669 (64.83/30.32)	PMLSAVLFGASSID..TVHILSLHGVIPEVAAALMP..LCETFGSL.....V
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     231.23|      61|     152|      41|     101|       3
---------------------------------------------------------------------------
   41-  101 (105.41/66.50)	HLFRTNTKTKTNSLWKFLHHALSSHLLSPLHVLSLLTCRV....IPYRQSHPEAF.RLYVELLRRF
  194-  247 (89.66/55.44)	HIERKQCQEHMRSINPFLAIEIVGQLTESIRAMVLL..RL....V.Y.LNMPEKF.N...GLLHKL
  325-  368 (36.15/17.86)	....................AMDGKQLSVKSAIVLLTETIytlrVFNRASWKETFlSLWLSALR..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.76|      26|      38|     755|     785|       4
---------------------------------------------------------------------------
  755-  780 (50.37/20.99)	DKPVYIDYFPKLRAWYCQNRSCIAST
  795-  820 (43.39/21.84)	NKIVSMIYWKMTKSGASQGNSSTPST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.68|      44|      45|    1136|    1180|       5
---------------------------------------------------------------------------
 1094- 1130 (25.25/10.94)	...........LVAEYARESASRW..TSKDTR......slksgnsslfFAASIARE
 1136- 1180 (71.56/51.54)	ASLLCVSGGFqLVLELYRETIPTWLLSSKGDKLG.KVS..........SVACIMEG
 1184- 1226 (65.87/42.40)	AYLLVMSGSF..AWGVGAKT.PSSATSKRACMVGvHMD..........FLARVLEG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11477 with Med33 domain of Kingdom Viridiplantae
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