<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11476

Description Uncharacterized protein
SequenceMANNPQSSSAQPHWPPAVGSLGPQNYGTPLPSQFRPAVPPQAQHFVPAASQQFRPVGQVPSSNVGMPAVQNQQMQFSQPLQQFPPRPNQPGLSTPSPQPIKVPYGQTNRPLTSASPQSHQTAPPLNNHMPGLGAPGMPPASSYSFTPSSFGQPPNNVNVSSQFQPISQVHVPVAPVAGQPWMSSGNQSVPLTTAVQQTSQQPPLISSADSVASVLSLTPQSASDWQEHTAADGRRYYYNKKTRQSSWEKPLELMTPIERADASTVWKEFTTSDGKKYYYNKVTKQSKWTIPEELKLAREQAQAASSQGTPSDTGVASQAPVAGAVSSAEMTTAAVSVSSNTLQTSSPVSVTPVASVANPSPTLLSGPTVPVSQSAAMTASGVQLPAVAVTPLPAVSSGVSTVPVALVNSNTTLISSESTASQDAMHSTDGGASSHDIEEAKKGMAMAGKVNVTPVEEKVPDDEPLTYANKQEAKSAFKFLLESANVQSDWTWEQTMREIISDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERVRDREDLFENYIVELERKEREIAVEEKRRNIAEYKKFLESCDFIKANTQWRKVQDRLEDDERCSRLDKIDRLLTFQDYIKDLEEKEEEKKKMQKEQLRRAERKNRDAFCKLMEEHVADGTLTAKTYWRDYCLKVKDLPQYLAVASNTSGSTPRELFDDVAEELQNQYYEDKNRIKDAMKSRKITMVSMWTVEDFKAAIWEDVSSLPMSDINLKLVYEELLERAKEKEEKEAKKRQRLADDFTKLLHTYKEITASSTWEDSRPLFEESQEYRSIAEESYRREIFEEYITHLQEKAKEKERKREEEKAKKEKEREEKDKRKEKDRKEKEREREREKGKERNKKEETDGENIDISDSHGPKEEKKREKDKEKEKDRKHRKRHQSAADDGSSDKDDREESKKSRRHSSDRKKSRKHAHSPESESEIRHKKHKRDHRDGSRRNSGYEELEDGEVGEDGEIQ
Length1034
PositionUnknown
OrganismCorchorus capsularis (Jute)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Grewioideae> Apeibeae> Corchorus.
Aromaticity0.06
Grand average of hydropathy-1.075
Instability index60.98
Isoelectric point6.91
Molecular weight117378.29
Publications









Function






Annotated function


GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11476
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     207.03|      28|      28|     867|     894|       1
---------------------------------------------------------------------------
  514-  539 (27.65/12.63)	.RKQAFNE.........YLG.........QRKKLE.AE...ERRMRQK.K
  581-  611 (28.92/13.61)	DREDLFEN.........YIV.........ELERKE.REiavEEKRRNIAE
  856-  883 (41.57/23.37)	YRREIFEE.........YIT.........HLQEKA.KE...KERKREEEK
  884-  912 (33.12/16.85)	AKKEKERE.........EKD.........KRKEKDrKE...KEREREREK
  913-  949 (25.96/11.33)	GKERNKKE.........ETDgenidisdsHGPKEE.KK...REKDKEKEK
  950-  983 (25.16/10.72)	DRKHRKRHqsaaddgssDKD.........DREE....S...KKSRRHSSD
  984- 1008 (24.65/10.32)	RKKSRKHA.........HSP.........ESESEI.RH...KKHKRD...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.05|      39|      40|     224|     262|       2
---------------------------------------------------------------------------
  224-  262 (77.14/48.49)	DWQEHTAADGRRYYYNKKTRQSSWEKPLELMTPIERADA
  265-  303 (71.91/44.68)	VWKEFTTSDGKKYYYNKVTKQSKWTIPEELKLAREQAQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     115.93|      17|      17|      82|      98|       3
---------------------------------------------------------------------------
   33-   43 (19.64/ 7.19)	QF...RPA..........VP........PQAQ
   52-   70 (20.31/ 7.71)	QFR.PVGQ..........VPssnvGM..PAVQ
   82-   98 (37.60/21.22)	QFP.PRPN..........QP....GLSTPSPQ
  101-  117 (18.76/ 6.50)	KVPyGQTN..........RP.....LTSASPQ
  162-  188 (19.62/ 7.17)	QFQ.PISQvhvpvapvagQP....WMSSGNQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     191.30|      36|      65|     544|     579|       5
---------------------------------------------------------------------------
  477-  510 (45.06/22.36)	.................................F.KFLLESANVQSDWTWEQTMREIISDKRYGALKT
  511-  578 (41.10/19.78)	LgerkqafneylgqrkkleaeerrmrqkkareeFTKMLEESKELTSSMRWSKAQSLFENDERFKAVER
  579-  646 (38.60/18.16)	VrdredlfenyivelerkereiaveekrrniaeYKKFLESCDFIKANTQWRKVQDRLEDDERCSRLDK
  647-  680 (28.31/11.48)	I........................drlltfqdYIKDLEEKEEEKKKMQ..........KEQLRRAER
  819-  849 (38.23/17.92)	.................................FTKLLHTYKEITASSTWEDSRPLFEESQEYR....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     166.82|      35|      48|     320|     354|       6
---------------------------------------------------------------------------
  130-  174 (36.41/19.78)	PGL.........GApgmppASSYSFTPSSF...G......QP.PNNVNVssqfqpisqvhVPVA
  320-  354 (58.80/36.70)	PVA.........GA.....VSSAEMTTAAV...SVSSNTLQT.SSPVSV...........TPVA
  370-  405 (40.19/22.64)	PVS.................QSAAMTASGVqlpAVAVTPLPAvSSGVST...........VPVA
  418-  455 (31.41/16.00)	STAsqdamhstdGG.....ASSHDIEEA........KKGMAM.AGKVNV...........TPV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.18|      26|      46|     733|     760|       7
---------------------------------------------------------------------------
  733-  760 (40.18/30.94)	LFDDVA.............EELQNQYYEDKNriKDAMKSRK
  776-  814 (32.99/18.50)	IWEDVSslpmsdinlklvyEELLERAKEKEE..KEAKKRQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11476 with Med35 domain of Kingdom Viridiplantae
Unable to open file!