<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11459
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLILENGMNSSMQVDQLDVDDLFGDGVGLSLPTARPITKPLRQRIDELRTRGCCQGVAWSRSGAIASISPDGRSLEARFLRSHPDDGEWGLSEPAKVDLISINATSPIVHLAWASTASPELAVIDATGRVAILTYSITLNRPFATRKWDNDPSDDLHAIVGSYWLPLAPQSKQYYVSHGPAVKDGNSYRYESSFIHAYGPWHPNPSKSALMCVTTNGILKMFWAQNNNKIEESTLELESVNSSDDLITHAALHSDKSNLWVAMATTSKQLRVVRVGIHWGLPQSQSDNKPPPGSQALNPTMQEKHVAISSWLPNGQSTTPVDSATNQLTHLEILPSTMDLTGQGWAPLIVLAVRVYLPNPNTPYQETQSIIDKWEVLNDQTQGLHPAFEQLGSRRNSTGSVPAPTSRLKRYEPVIINKAVVGVSTLQYGRVVCLAFADGSVEYRDRFTMGEIYSEINLDRVMNLHQVGFTFQDDAPCVQLAFSPTHCSLVKIQDDGKVKWSKLHHPLGDIGNTNRDAQYAATLAALTVAASTATFNNINYDDILAVARPYADKKRFTFDWINEIVRMLKIPVDYSEDTHHDSLVRNSSLQMCLSILNHLGYKGMFQPRSFGGKFAMLALNARNVVILITIASNTPVNIREKLSPLDEHEVVDALCGCAKWSLDLLSWLTDSLFSLLDDSQFQALLTPQRFSEMSTYLQSRADVSLHLLLCSSTRGFLSAVCRRILHLEILSNRAIEFYERRAAMHNATDPSSSQHKGLHVVLYKAYQKMQRITSSSLIKVQEFDRLLTVLNNDIRTAYQTSLASLASKNPAAAAAGSKAVDAQIKNAQIHCELNMLLASSPPPAFLGVLLKFFNNDLRTYRAQTDPSRLFFADFDLLEIEDDRRALAARKASGRYIDVFKRVELLAQPAKGATTDEETKTGDEVKTPQWRRCVRCSAVMEDVFGSRPGFTFVLAQQRKCSCGGHWGLLPRGQLIS |
Length | 976 |
Position | Tail |
Organism | Colletotrichum chlorophyti |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.225 |
Instability index | 43.07 |
Isoelectric point | 6.97 |
Molecular weight | 108308.89 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP11459
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 298.54| 96| 158| 422| 524| 1
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422- 524 (151.29/137.47) VGVSTLQygrvVCLAFADgSVEYRDRF...TMGEIYSEINLDRvMNLhQVGFTFQDDAPC.VQLAFSPTHCSLVKIQDDGKVKWS.KLHHPLGD.IGNTNRDAQYAATL
585- 686 (147.25/107.98) VRNSSLQ....MCLSILN.HLGYKGMFqprSFGGKFAMLALNA.RNV.VILITIASNTPVnIREKLSPLDEHEVVDALCGCAKWSlDLLSWLTDsLFSLLDDSQFQALL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 275.28| 69| 146| 99| 167| 2
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99- 163 (104.41/66.14) ..............................................DLISINATSPIVHL.AWA..ST......ASPELAVIDATGRVAI...LTYSITLNRPF.ATR....KWD..NDPSDDL..HAIVGS
164- 255 (40.84/21.10) YWLPlapqskqyyvshgpavkdgnsyryessfihaygpwhpnpsksALMCV.TTNGILKM.FWA..QNnnkieeSTLELESVNS....................................SDDLitHAALHS
260- 311 (64.98/38.20) LWV.............................................................amAT......TSKQLRVV....RVGIhwgLPQSQSDNKPP.PGS....QAL..NPTMQEK..HVAISS
312- 386 (65.05/38.25) .WLP..................................ngqsttpvD....SATNQLTHLeILP..ST......MDLTGQGWAPLIVLAV...RVYLPNPNTPYqETQsiidKWEvlNDQTQGL..H.....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 217.41| 65| 874| 22| 92| 3
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22- 92 (108.29/80.52) DLFGDGVGLSLPTARPITKPLRQRIDELRTRgccqgvAWSRSGAIASISPD..GRSLEARFL....RSHPDDGEWGL
898- 968 (109.12/67.06) DVFKRVELLAQPAKGATTDEETKTGDEVKTP......QWRRCVRCSAVMEDvfGSRPGFTFVlaqqRKCSCGGHWGL
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