<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11438

Description Uncharacterized protein
SequenceMEDKASSSTPPPSSDPTDPPLDSPTVSSPDSSLVSPPESPLGSPPNSPLGSSLGSPIGSPTTDSPLDYLDTDDWDIPERSPTPPDLFIKKMDKDQPLKQVHQRVNNDVAELLKRYENIMACANMERTSHAAIAAESTQIDVEVNAIVRAAEDILSLTRSMKEAWLFGTLDTLGESSQDVERNEKLEDDVKAVEKAIEAGAFQKLCPEDDKTGKDKQKEN
Length219
PositionHead
OrganismPenicillium subrubescens
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
Aromaticity0.03
Grand average of hydropathy-0.746
Instability index65.29
Isoelectric point4.36
Molecular weight23757.97
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11438
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.91|      15|      15|      35|      49|       1
---------------------------------------------------------------------------
   35-   49 (33.57/14.58)	SPPESPLGSP.PNSPL
   51-   66 (23.35/ 8.05)	SSLGSPIGSPtTDSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.59|      31|      37|     135|     170|       2
---------------------------------------------------------------------------
  135-  169 (39.09/44.78)	ESTQiDVEVNAivRAAEDILSLTRSMkEAWLFGTL
  174-  204 (50.50/32.30)	ESSQ.DVERNE..KLEDDVKAVEKAI.EAGAFQKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11438 with Med22 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEDKASSSTPPPSSDPTDPPLDSPTVSSPDSSLVSPPESPLGSPPNSPLGSSLGSPIGSPTTDSPLDYLDTDDWDIPERSPTPPDLFIKKMDKDQPLKQVHQRVNN
1
106










Molecular Recognition Features






MoRF SequenceStartStop




1) PDLFIKKMD
2) VEKAIEAGA
84
192
92
200