<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11429
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MLSDTASPDQWRTFVQRCLAHRVDVDEFKDLSKLMQNRSPLKENDLLDLLLEARAASSIAWDPLLPVYVDGLCKVGQVKAASALRRLLAHSSIRQKSHSKPNMSTLMTDIKVIQDVMLSISTGAIPRRIAEAAELYDATVDWIVAFVEWHNHGLSQQTGGLMSSPDAVSLFESLGILLAALSGTSKGLETLSSDYQQELKTKLGQALISYLPLCVDVSLPLRHRLDTLQKEFNLYGEQPSKQLDHPTIEGMNVNALQFEASVMDGPVINTRAGLYVYLNSMLVGRPLIDDSMLINYLTNRYEGHQEVLVVEITTAAFDVLSNGVHRNESSRTMFLFRTFLVNKLPAFFAAMTAASMVPIPMEMYITQALNRLDPNSFPSFSQMFSMQGSSILSDARQEFLFACASHRLIQESSIERLLGENPMQTVPVGGPYQKDDLVSQINSRPERAEQLIGEIESMEGNAGAIVGAITEVMFNLCNQKETMTLKNICNSLSRRPQTLDVILMFRTAKQVLQPLCALLDSWRWDEDQGENQPVYDEFGSILLLVLVFKYRYDLSPADMGITSNDSFLLKLLDRGSCSQKLTELSEKQNKDLGSWIGALFIAEGINEETMSTCSPQEFYMLVATLFDQSLGACESGKMDFETLKGGFEYLLEPFLLPSLVVALTWLGNHIWQSETEPEIPLKTLYSLIKPSSISGEAQAIHKTVLHITARPLEEQLKDVRTRHQARQNIDKISDIKPILDALDPYLSFRRVGSCLRSELEVWAAPAAGGFLGSIRGTLQSLTLWSASSGISLQPQSYTHRQLLAGIRILGSARVLGALIDELKQQTEAGSGDLALDIAATMICAPMPESFAVDQNSCHPVDQSKESLPRCAILTLRDALSLQHQNVPKISEKEPLRAEVIVRLWRRVSLLAAPPSRVSNIDVSNIIQNMELGVGGQDRMNLDATGVSGTGVGHDDPANIDQMLDKATAAAAAGMDGVVGQDIGLDSSVTGMDAIDDVLNAADMAVGNPEFLDLDMEGMF |
Length | 1019 |
Position | Tail |
Organism | Penicillium subrubescens |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.055 |
Instability index | 47.19 |
Isoelectric point | 4.91 |
Molecular weight | 112193.13 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP11429
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 239.36| 78| 155| 245| 335| 1
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245- 335 (109.99/129.10) HPTIEGMNVNALQFEASVMDGPVintrAGLYVY..LNSMLVGRPLIDDSmLINYLtNRYEGHQEVLVVEITTAAFDvLSNgvhrneSSRTMFL
406- 485 (129.37/103.06) HRLIQESSIERLLGENPMQTVPV....GGPYQKddLVSQINSRPERAEQ.LIGEI.ESMEGNAGAIVGAITEVMFN.LCN......QKETMTL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 120.98| 31| 69| 915| 945| 2
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915- 945 (52.86/34.64) S..RVSNID.VSNIIQNMEL..........GVGGQDRMNLDATG
947- 986 (30.94/17.08) SgtGVGHDD.PANIDQMLDKataaaaagmdGVVGQD.IGLDS..
988- 1017 (37.18/22.08) ....VTGMDaIDDVLNAADM..........AVGNPEFLDLDMEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 98.69| 32| 154| 716| 751| 3
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716- 751 (46.93/57.53) LKD.VRTRHqarQNIDKISDIKPILDALDPYLsFRRV
875- 907 (51.76/45.30) LRDaLSLQH...QNVPKISEKEPLRAEVIVRL.WRRV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 69.54| 20| 299| 212| 239| 4
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212- 239 (27.53/36.06) PLCvdvSLPLRHRLDTLQKEfnlygEQP
514- 533 (42.01/26.16) PLC...ALLDSWRWDEDQGE.....NQP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.63| 44| 126| 34| 77| 6
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34- 77 (75.32/48.41) LMQNRSPLKENDLLDLLLEARAASSIAWDPLLPVYVDGL.CKVGQ
161- 205 (66.32/41.71) LMSSPDAVSLFESLGILLAALSGTSKGLETLSSDYQQELkTKLGQ
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