<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11398

Description Uncharacterized protein
SequenceMSSQGNAYEVALFGEFFARDLKAILNRITLHSEYSESMHTREVTFEPIDAQHQRDIGNEPVVLRAKKELTRKDEGWILYSYLKPESVRAHPEATVRPWATCHVVGDALSFAQALGHTRRSQIYKRGYLFRRRTLVIQMFQQEQVDPNTQEPIPAHPDTLWEVEVKTANPIRNTQETPLSQSIDAVLEVQLLMKGLLDLRRQDV
Length203
PositionHead
OrganismLentinula edodes (Shiitake mushroom) (Lentinus edodes)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Omphalotaceae> Lentinula.
Aromaticity0.08
Grand average of hydropathy-0.508
Instability index50.33
Isoelectric point6.39
Molecular weight23423.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11398
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.40|      19|      23|     145|     163|       1
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  145-  163 (38.55/22.89)	DP..NTQE.PIPAHPDTLWEVE
  168-  189 (24.85/12.75)	NPirNTQEtPLSQSIDAVLEVQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.88|      16|      23|      59|      76|       2
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   59-   76 (23.31/19.71)	EPVVLRAKKELTRKDegW
   83-   98 (30.58/18.62)	KPESVRAHPEATVRP..W
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11398 with Med18 domain of Kingdom Fungi
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