<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11384

Description U-box domain-containing protein/Pkinase_Tyr domain-containing protein
SequenceMAMKFESKSSSSSSPSSSLARQDVDDDIVYVAVGKEVEESKPTLLWALQNFGGRVRILHVHHCPTTIPSTCRVGEQDYRISSERQKMNKILNDYLQICHQAEVHAEKLHIEMDDVGKGIVELIYQHSIKKLVMGAAANKHYSERTIKSEKAIYVQQHVPSFCKIWFICNGLLIYTGECNSDAFKVEVTSPSSVVETGPSNPRSPFQDSGHLGCSSSEVVDCSTLISRTSGEETIDQLINQLEAAFLEAEKSKREAYEESGKRVKAEKTTIEALRRARALENSYTEELRRRSNIEEALTKTKEDLQEMRKQQDEERLTSRDQKLLLENQVLSYEHRMKELHNEILSSTEKVEIYRKERDNLQIGYDAAIRRIELLRKQTEEASSSHTDQFLSEFSVSEIHKATRDFHSSMKIAEGGYGSIYQGSLRQTEVAIKVVHSSSLQGPLQFEQEVNLLSKLRHPNLVTLIGVCREIWALVYEYLPDGSLEDHLICKGDTPPLSWQTRICIAIGLCSVLIFLHSSNPCVVHGNLKPGNILLDAKFACKLSDFGICRALSMRGNLNNGTNPHEAFPYMDPQFLATGELSPKSDIYSFGIILLQLLTGRSPLNMANDVSNAVDQNNLNSLLDPLAGNWPFVQALQLARLGLRCCSMNRSRRPDLVSEVWDVLKRMGDSCESPSSFQPTTEDHSQAPSYFICPILQDVMEDPHVAADGFTYELEEIRGWLSSGHDTSPMTNLRLSNGNLVPNRALRSAIQDWRKRYPNVQN
Length761
PositionTail
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.07
Grand average of hydropathy-0.434
Instability index54.26
Isoelectric point5.89
Molecular weight85740.05
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11384
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.51|      40|      43|     519|     558|       1
---------------------------------------------------------------------------
  474-  513 (41.38/23.59)	....VYEYLPDGS..LEDHLICKgdtppLSwQ...TRI..CIAIGLCSVLI
  519-  558 (73.30/47.28)	NPCVVHGNLKPGNILLDAKFACK.....LS.D...FGI..CRALSMRGNLN
  562-  604 (56.83/35.06)	NPHEAFPYMDP.QFLATGELSPK......S.DiysFGIilLQLLTGRSPLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.67|      43|      48|     279|     325|       2
---------------------------------------------------------------------------
  279-  321 (71.18/61.59)	LEN...SYTE..ELRR..RSNIEEALTKTKEDLQEMRKQQDEERLTSRDQ
  339-  388 (57.49/38.51)	LHNeilSSTEkvEIYRkeRDNLQIGYDAAIRRIELLRKQTEEASSSHTDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.52|      37|     395|      31|      72|       3
---------------------------------------------------------------------------
   31-   72 (50.24/60.83)	VAVgKEVEESkpTLLWALQnFGGRVRIL.HVHHcP..TTIPSTCR
  429-  468 (56.28/40.56)	VAI.KVVHSS..SLQGPLQ.FEQEVNLLsKLRH.PnlVTLIGVCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.52|      24|     523|     159|     186|       4
---------------------------------------------------------------------------
  159-  186 (40.24/39.61)	PSFckiwFICNGL..LIYTGECNSDAFKVE
  687-  712 (42.28/28.11)	PSY....FICPILqdVMEDPHVAADGFTYE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11384 with Med32 domain of Kingdom Viridiplantae
Unable to open file!