<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11383

Description WW domain-containing protein/FF domain-containing protein (Fragment)
SequenceVVWRETRSPISFPIDDTQLHCSFKIQEVQPSTSQAPMSGPAAGGQSGGPLTSNVAPSVPDAAVPISKGSNGSSSDLMQEFAHSNFSNTPGFVVPAFSYSTLPIANTSSGGSQQSSSSTVTNPNPTPTSPMVIQPHVSGLSMPSSSSFSYISQTGVSFSTSQQFQASTPSAQGLMQVGKVTESIAASLQHPIAGQSISFTRGASATVMQSLVPVTKGAPSNADTSTAVSQAGVQQQMYPTYPSLPAMAASPQGLWVHPPQMGGMPRPPFLPYPAVYPGPFLAPARNVALPSVLSLDSQPPGVTPMGTTGAIPMSSAAPGHHLVVTTGIQTELPPPGIDDRTHYHDVTNNGAAFNKQSEVWTAFRTDTGNVYYYNAITGESTYEKPPGFKVEPDKVPMQPSPTLMEYLPGTDWVLVSTNDGKKYYYNSKTKLSSWQIPTEVAELRKKQDDDVSKEHPISVPNTNVLTEKGSSPISLSAPAVNTGGRDATALRTSGVPGSSSALDLIKKKLQDPGAPITSSLTPASSGTAALESNGSRAVEATVKGLQSENSKDKLKDANGDGNVSDSSSDSEDVDSGPTKEVCLVQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKVAIEGFKQLLEEASEDIDHYTDYQTFKKKWDSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRVAAASDFKSMLREKGDITAISRWSKVKDVLRNDPRYKSVKHEDREILFSQYIAELKAVEEEAEREAKAKKHEQERLKERERELRKRKEREEQEVERVRVKVRRKEAVASLQALLVETIKDPQASWTESKPKLEKDPQGRATNPDFDPYDIEKLFREHIKILHQRCAHDFKALLSEVVTTEAAVQKSDGKTALNSWSTAKRLLKPDARYNRMPRKDREGLWRRYVEEMLRKQKPDFDQKDEKHKDAKGRSSIDSGRLPSGSRRTRERR
Length980
PositionUnknown
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.06
Grand average of hydropathy-0.696
Instability index47.98
Isoelectric point8.93
Molecular weight107839.75
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11383
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     407.68|      64|      65|     652|     715|       1
---------------------------------------------------------------------------
  585-  639 (73.05/43.74)	..........FKE.MLKE....RGVAPFSKWEKELPKIVF.......DPRFKA....IpSHSARRSLFEHYV.KT..R.AEEERK
  642-  709 (94.36/58.76)	RAAQKVaiegFKQ.LLEE..ASEDIDHYTDYQTFKKKWDS.......DPRFEA....L.DRKDRELLLNERV.LPLKR.AAEEKA
  710-  775 (87.92/54.22)	QAIRVAaasdFKS.MLRE...KGDITAISRWSKVKDVLRN.......DPRYKS....V.KHEDREILFSQYI.AELK..AVEEEA
  776-  823 (32.08/14.86)	E..REAkakkHEQeRLKE..RERELR........KRK......................EREEQEV...ERVrVKVRRkEAVASL
  824-  880 (69.07/40.93)	QA............LLVE..TIK..DPQASWTESKPKLEK.......DPQGRAtnpdF.DPYDIEKLFREHI.KILHQ.RCAH..
  882-  939 (51.21/28.34)	..........FKA.LLSEvvTTEAAVQKSDGKTALNSWSTakrllkpDARYNR....M.PRKDREGL........WRR.YVEE..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     121.65|      24|      25|      30|      53|       2
---------------------------------------------------------------------------
    7-   27 (19.16/ 6.02)	......RS..PISFPIDDT..QLHCSFkIQE
   30-   53 (44.04/24.36)	P..STSQA..PMSGPAAGG..QSGGPL.TSN
   56-   79 (30.00/14.02)	P..SVPDAavPISKGSNG....SSSDL.MQE
   94-  121 (28.46/12.88)	PafSYSTL..PIANTSSGGsqQSSSST.VTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.23|      33|     139|     239|     271|       3
---------------------------------------------------------------------------
  239-  271 (64.65/25.97)	TYPSLPAMAASPQG..LWVHPPQMGGMPRPPFLPY
  306-  339 (40.10/13.86)	TTGAIPMSSAAP.GhhLVVTTGIQTELPPPGIDDR
  380-  405 (41.47/14.54)	TYE.......KPPG..FKVEPDKVPMQPSPTLMEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.03|      21|      49|     359|     379|       4
---------------------------------------------------------------------------
  359-  379 (40.78/30.66)	WTAFRTDTGNVYYYNAITGES
  411-  431 (39.25/29.23)	WVLVSTNDGKKYYYNSKTKLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.86|      31|      42|     505|     537|       7
---------------------------------------------------------------------------
  505-  537 (43.79/28.98)	KK.KLQDpgAPITSSLTPASSGTAALESNGSRAV
  550-  580 (51.80/27.85)	KD.KLKD..ANGDGNVSDSSSDSEDVDSGPTKEV
  951-  975 (33.26/15.10)	KDeKHKD..AKGRSSI.....DSGRLPSGSRR..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.78|      31|      39|     146|     184|       8
---------------------------------------------------------------------------
  165-  201 (35.01/27.24)	ASTPSAQGLMQVGKVTESIAaSLQ.HpIAGQSIsftrG
  202-  233 (45.77/25.89)	ASATVMQSLVPVTKGAPSNA.DTStA.VSQAGV....Q
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11383 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ANTSSGGSQQSSSSTVTNPNPTPTSPMVIQPHVS
2) DPGAPITSSLTPASSGTAALESNGSRAVEATVKGLQSENSKDKLKDANGDGNVSDSSSDSEDVDSGPT
3) FKIQEVQPSTSQAPMSGPAAGGQSGGPLTSNVAPSVPDAAVPISKGSNGSSSDLMQEF
4) IPTEVAELRKKQDDDVSKEHPISVPNTNVLTEKGSSPISLSAPAVNTGGRDATALRTSGVPG
5) QKPDFDQKDEKHKDAKGRSSIDSGRLPSGSRRTRERR
104
510
23
435
944
137
577
80
496
980










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQ
2) LWRRYVEEMLRKQKPDFDQKDEKH
500
932
509
955