<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11381

Description Usp domain-containing protein/U-box domain-containing protein/Pkinase_Tyr domain-containing protein
SequenceMGNVSVDEDIEEGREFDVEETIFVAVGENVEKSKTTLFWAVQSFLGKKICVLHVHRKPPHILALTDKKLASSKLKQHAVKAFQHLQRQKLQSLLYEYQLILAQEGVEADKVWIETDDVESGIVEIIVRHNIRWLVMGAAADKYYSKKLTELKSKKAVFVCQQAPNFCHIWFACKGCLIYTREGSNNLSETKIASPLMLLNSDIESEQLEHLRSESATHVLRSIDAEKDIDEMEGIVRRSNSQCLEHSGWPTNRLIGSLESTLSLSHEEEKAQGLATGRTNGRREQAIIDSRDLERKSFKEAVKRWKAEDDAMEAKCEVKTLESICVKEMSQRKEMVEVLARGKLEVERMKNQQDESMKGLRMVQNQKSVLESRLAESHVTVKELEEKIISAVGLLISFKEKRDKLRLEYEEAISKVNGLKKMVKVEAASFCSPQILAFSFMEINEATQDFEPSWKIGEGKYGSVYHGLLRHVHVAIKMLPSYGSQSLLDFQNEVEVLSRIRHPNLVTLIGTCPESRSLVYEYLRNGSLEDRLACKDNTPPLSWQKRMCIASEICSVLVFLHSNKPGIIHGNLKPSNVLLDANFVSKLGDLGINKLISQVEDAANCTTLFDAFNSKVTSAYMDPECPEIGKLVPESDVYSFGIILLQLLTARLIPGIVKDVKCALEKKNLIALLDSSAGDWPLWLAEKLASLALRCCGNRLNRPDLVSEIWNVVGPLRDLSLIPASSSGLKDQRRIPSHFVCPIFQEIMKDPYIAADGFTYEAEAIIGWLKSDHNTSPMTNLKLEHCNLLPNHALYQAIQEWQLQR
Length805
PositionTail
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.06
Grand average of hydropathy-0.256
Instability index43.35
Isoelectric point6.24
Molecular weight90884.62
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11381
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     232.42|      78|     118|     427|     521|       1
---------------------------------------------------------------------------
  427-  521 (108.19/116.96)	AASFCSpqILAfsFMEINEAT...QDFEPSWKIGEGKYGSvyhgLLRHVHVAiKMLP....SYGSQSLLDFQNEvEVLSRIRHPNlvtligtCPESRSLVYE
  550-  634 (124.23/82.86)	ASEICS..VLV..FLHSNKPGiihGNLKPSNVLLDANFVS....KLGDLGIN.KLISqvedAANCTTLFDAFNS.KVTSAYMDPE.......CPEIGKLVPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     211.20|      75|     112|       8|     119|       3
---------------------------------------------------------------------------
   15-   95 (119.25/96.84)	EFDVEETI.FVAVGENVE..........KSKTTLF...........W.AVqsflgkKICVLHVHRKPPHILALTDKKLASSKLKQH...AVKAFQHLQRQK..LQSLLY
  124-  194 (42.79/54.45)	EIIVRHNIrWLVMGAAADkyyskkltelKSKKAVFvcqqapnfchiWfAC......KGCLIYTREGSNN...LSETKIAS.............................
  324-  375 (49.15/18.43)	.........................................................ICVKEMSQRKEMVEVLARGKLEVERMKNQqdeSMKGLRMVQNQKsvLESRLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.72|      12|     309|     405|     420|       6
---------------------------------------------------------------------------
  383-  394 (19.25/ 9.79)	ELEEKIISAVGL
  408-  419 (20.47/10.56)	EYEEAISKVNGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11381 with Med32 domain of Kingdom Viridiplantae
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