<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11380

Description Med26 domain-containing protein
SequenceMNNMMDLDDFRSILDTAGVDVWAFIDTAILVASLDYGLELKQRRDQIVERLYASSISTLCKNCDEFDAAAVAAVAGGGRANKLQVKSPVEKDTCHDEGKGGTSPLTPQSLSGDDEDDLDPYGGLFDDEQKRVLDIKDHLEDPDQSEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKQLVRKWKEIVDEWVKLNAPGEVASSVLMVDGDSPQQKIPQNGHHQVPDFAYSPNPHNVSSGSDKNNSEVERKPKAIIPGKGAPTKPSQSANVSASASHNAQRQRQQKEHEEEKDSNFDSERLASARKRLQMNYKEAENAKKQRTIQVMDIHEIPKPKNTFFGKNKGGGFQGRHW
Length365
PositionUnknown
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.05
Grand average of hydropathy-0.841
Instability index45.93
Isoelectric point5.72
Molecular weight40718.87
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11380
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.80|      19|      38|     225|     245|       2
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  225-  245 (33.26/23.42)	PQQKIPQNGHHQVPdfAYSPN
  264-  282 (34.54/17.95)	PKAIIPGKGAPTKP..SQSAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11380 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASSVLMVDGDSPQQKIPQNGHHQVPDFAYSPNPHNVSSGSDKNNSEVERKPKAIIPGKGAPTKPSQSANVSASASHNAQRQRQQKEHEEEKDSNFDSERLASARKRLQMNYKEAENAKKQRTIQVMDIHEIPKPKNTFFGKNKGGGFQGRHW
2) VKSPVEKDTCHDEGKGGTSPLTPQSLSGDD
214
85
365
114










Molecular Recognition Features






MoRF SequenceStartStop




1) FQGRHW
2) RKPKAIIPGK
3) TFFGK
4) YGGLFDDEQKRVLDIKDHLE
360
262
350
121
365
271
354
140