<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11378

Description WW domain-containing protein/FF domain-containing protein
SequenceMDPHGFVPPMSIQFRPMVPTQPSQQFIPVASQQFQPLGRGVPVMNTGFSSSLQPQFSQFVQQLPARPGQPGPVLPPPPAISLPNAQPNRPMTPGAPLPPPNVQTQNNYMPGLVGPGAPLSSSYTFAPSSYGQPQITVNALTQYQSISQMHAPSVPAGGQLGLSVGQSTASVTPLQHNGEQSSFTIIPAAGVQSKPTEEAIREWVAHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSIPEELKLAREQVDKMSMKGMQEMFANSHTPASAPSSVVKAPTSGDASSSVVQAIASSPVTVAPVVATDNIEPLTVSGSSALPVVASSMTTKGDGVQTVKTFAAVSESAGSAVTLVNAVTSPMNESSNHSGQENVSTVDGIPAQDIEEVRKDAVIGEKSNNIWEQKSVDQESLTYANKLEAKNAFRELLESVNVGSDWTWDQALRVIINDRRYGALKTLGERKQAFNEFLVQKKKQDAEERRIKQRRAREEYRKMLEESGDLILSTRWSKIVTMLEDDERFKAVEREKDRRDLFDEYVDELKQKEKTKAQEDRKRDIMEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRMEFFQEYLNDLEREEEEKWKTQKEEMRKAERKNRDEFRKLMDGHVAVGTLTAKTRWRDYCMNVKDFPAYLAVSTNTSGSTPKDLFEDVTEELQKQYNDDKSRIKDAVKLRKITLSSSWTIEDLKAAIAEDVGCTPISDVNFKLVLDELLERVKEKEEKEAKKRKHLVDDFIDALHSIKEINMASKWENFKQLFEGSQEYSSIGDESLCKGIFEEHILQLKEEAKENERKRKEEKAKKEKERDERERRKVKHGRERERGREREKESLKKDIADSEIADIADIYVESGNKRAEKDNNKKHRKRHQSTVDNLYENEKDRSKDPNRHNSDHKKSKRHASTPESESENRHKRHKRDHRNGSRRHGNHGELEDGEFGDDRESR
Length1000
PositionUnknown
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.07
Grand average of hydropathy-0.981
Instability index55.10
Isoelectric point6.92
Molecular weight113980.07
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11378
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.47|      19|      20|      59|      77|       1
---------------------------------------------------------------------------
   52-   73 (31.68/16.45)	LQPQ.fsqFVQQLPARPGQPGPV
   74-   96 (28.51/14.05)	LPPPpaisLPNAQPNRPMTPGAP
   97-  116 (28.28/13.88)	LPPP...nVQTQNNYMPGLVGPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.16|      38|      39|     202|     239|       2
---------------------------------------------------------------------------
  202-  239 (76.26/54.50)	EWVAHTSADGRRYYYNKRTRQSSWEKPLELMTPIERAD
  243-  280 (72.90/51.73)	DWKEFTSPDGRKYYYNKVTKQSKWSIPEELKLAREQVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     104.79|      20|      20|     939|     958|       3
---------------------------------------------------------------------------
  857-  876 (20.42/ 9.06)	KAKKEKE..RDERE..RRkvkHGR
  912-  927 (27.04/14.79)	RAEKDN..NKKHR...KR...HQS
  939-  958 (36.08/22.61)	RSKDPNRHNSDHKK.SKR...HAS
  967-  982 (21.25/ 9.77)	RHK...RHKRDHRNgSRR...H..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     385.26|      64|      65|     511|     574|       4
---------------------------------------------------------------------------
  444-  503 (81.80/55.18)	K.......LEAKNAFRELLE....SVNVG.SDWTWD......................QALRVIINDRRYG.ALKTL...GERKQAFNEF...LVQ.KK....KQD
  511-  574 (106.29/74.15)	Q.......RRAREEYRKMLE...ESGDLI.LSTRWS......................KIVTMLEDDERFK.AVERE...KDRRDLFDEYVDELKQ.KE....KTK
  579-  645 (85.00/57.66)	R.......KRDIMEYRQFLE....SCDFIkASTQWR......................KVQDRLEADERCS.RLEK....IDRMEFFQEYLNDLER.EEeekwKTQ
  646-  721 (73.82/49.00)	KeemrkaeRKNRDEFRKLMDghvAVGTLT.AKTRWR......................DYCMNVKDFPAYL.AVSTNtsgSTPKDLFEDVTEEL.Q.KQ....YND
  726-  802 (38.34/21.52)	I.......KDA.VKLRKI..........T.LSSSWTiedlkaaiaedvgctpisdvnfKLV.LDELLERVKeKEEKE..aKKRKHLVDDFIDALHSiKE.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.51|      14|      17|       6|      22|       5
---------------------------------------------------------------------------
    6-   19 (30.45/20.97)	FVPPMSIQFRPM...VP
   26-   42 (23.06/ 6.98)	FIPVASQQFQPLgrgVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.91|      15|      22|     330|     347|       6
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  297-  311 (24.98/ 9.48)	PASAPSSVVKAPTSG
  330-  344 (25.93/11.48)	PVVATDNIEPLTVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.53|      13|      30|     315|     327|       7
---------------------------------------------------------------------------
  315-  327 (22.33/12.93)	SSVVQAIASSPVT
  345-  357 (20.20/11.03)	SSALPVVASSMTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.79|      11|      17|     145|     155|       8
---------------------------------------------------------------------------
  120-  130 (18.96/12.03)	SSSYTFAPSSY
  145-  155 (20.83/14.03)	SISQMHAPSVP
  163-  173 (17.00/ 9.93)	SVGQSTASVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.76|      20|      38|     360|     379|      12
---------------------------------------------------------------------------
  360-  379 (31.85/21.63)	DGVQTVKTFAA..VSESAGSAV
  399-  420 (27.91/18.03)	ENVSTVDGIPAqdIEEVRKDAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11378 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKENERKRKEEKAKKEKERDERERRKVKHGRERERGREREKESLKKDIADSEIADIADIYVESGNKRAEKDNNKKHRKRHQSTVDNLYENEKDRSKDPNRHNSDHKKSKRHASTPESESENRHKRHKRDHRNGSRRHGNHGELEDGEFGDDRESR
2) ISQMHAPSVPAGGQLGLSVGQSTASVTPLQHNGEQSSFTIIPAAGV
3) QFSQFVQQLPARPGQPGPVLPPPPAISLPNAQPNRPMTPGAPLPPPNVQTQNNYMPGLVG
845
146
55
1000
191
114










Molecular Recognition Features






MoRF SequenceStartStop




NANANA