<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11372

Description Med6 domain-containing protein
SequenceMAAPTPSSEGNPPPVGTDMTGICFRDQLWLNTYPQDRNFIFDYFALSPFYDWSCNNQQLRLQSLHPLDMSHLMKMTGIEYVLSEIMEPNLFVIRKQKRDSPEKVTPMLCYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDAENENVHSESKVGKELIDFKEVKRVDHILASLKRKLPPAPPPPPFPEGYIPALTSEAEKGPETQQAGEPQPPPIDPIIDQGPAKRMKF
Length244
PositionHead
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.10
Grand average of hydropathy-0.425
Instability index60.07
Isoelectric point5.86
Molecular weight27534.32
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11372
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.23|      13|      30|     194|     208|       1
---------------------------------------------------------------------------
  194-  208 (26.28/13.56)	PAPPP..PPFPEGyiPA
  225-  239 (24.95/ 7.92)	PQPPPidPIIDQG..PA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.05|       9|      24|     103|     112|       2
---------------------------------------------------------------------------
  103-  112 (13.78/14.05)	KVTPMLcYYI
  130-  138 (17.27/10.22)	RVGRAL.YYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.66|      14|      30|      23|      36|       3
---------------------------------------------------------------------------
   23-   36 (29.68/21.51)	CFRDQLWLNT.YPQD
   54-   68 (22.98/15.12)	CNNQQLRLQSlHPLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11372 with Med6 domain of Kingdom Viridiplantae
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