<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11369

Description DUF974 domain-containing protein (Fragment)
SequenceMNELQQQHQQQEQQESVAAAATEEEEEEEEEKQPVVLVVAAEQTLEVSSNNNNHNSASPEKAEAVGCGEAEVPKNTEDPMDEDSVGPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVTWCGKLNAIACASETCARIPSSTANPPFWIPIHIVIPERPTESAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGQANLVRDASCWRREHEWRQDIAVVTKWLSGVSPYRWLSSKSSALPNSNSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSIQLHWSQWPPNQSGAASKWFCTSKGLLGAGPSGIMAADAIITDSGAMRVAGVPIVNPSTVVVWEVTPGPGNGFQAIPKTRLNHGILPSLNPPNWAGFAPLAAYLFSWQEYSISETKHGRKQTDQDFIDTVSLHCSPVSNFSAYVSPEVAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKADTCIPPTNDFKSHQASATDLTSDVQKIPDFGVENEKRVGFDPFDLPSDVRTLARIIYSAHGGEIAIAFLRGGVHIFSGPNFAPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQAKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLPEPWQASGETLGSIDPEAMAVEPALVSSIQAYVDAILDLSSHFITRLRRYASFCRTLATHAVTAGTGSNRNMVASPTQSSASPTSQGGQNGTTSSTGSTQMQAWVQVAIAKISSNSDGVTNSTPNPISGPSPFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTLLPRFMGGAQRSTDTNMQKPQPGASSIVEEINSVPAKPTSSVVRSDEGQVARPGQLIPGPKGVEEGHAGRSRLGSGNAGQGYTSEEVKVLFLILTDLCRRTAALSHPLPLSQVGSGNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGSWSDPEDMGSVDDTPKLSNSTELIDSNLLESCDVYYGAHGLWPRKRRFSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASLVAANPPSQNDRETWWISRWAHGCPMCGGTWVRVVFLQNSEGMARAFCRHGGGGGGGGSQHSLAFRVMRLCRPSFHVDTPLRIDPLDLLLGEDIFDDPIAASRIPPLIAAHLTTSSDLTFRTRFLLHDPSDSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRDIVIKAEIQTERQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGPHTLVCTALYSDGDGERKYLPQFFKFVVANPLSVRTKVSFVCCDTTFIEACIENHTKSNLYMDQVEFEPAQHWSATILVADEHPLKRNSPTREIFKPPVLIRSSGGIHNYLYQLKLSSQDSAPVKVEGSNVLGKLQITWRTNLGEPGRLQTQQILGT
Length1609
PositionTail
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.08
Grand average of hydropathy-0.201
Instability index45.12
Isoelectric point5.89
Molecular weight175418.97
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11369
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.87|      16|      21|     508|     527|       1
---------------------------------------------------------------------------
  509-  525 (26.69/14.25)	TSSFGGQAPMQtVWVSK
  871-  886 (29.18/ 9.53)	TTSSTGSTQMQ.AWVQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.11|      82|      88|    1407|    1493|       2
---------------------------------------------------------------------------
 1407- 1493 (124.99/89.94)	DIV.IKAEIQTERQRILLLDTSK.SPVESIRAggryDFIV..EHDVKELGPHTLVC..TALYSDGDGERKYLPQfFKFVVANPLSVRTKVSFV
 1496- 1583 (119.13/72.08)	DTTfIEACIENHTKSNLYMDQVEfEPAQHWSA....TILVadEHPLKRNSPTREIFkpPVLIRSSGGIHNYLYQ.LKLSSQDSAPVKVEGSNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.65|      26|      30|     565|     594|       4
---------------------------------------------------------------------------
  565-  594 (42.63/46.43)	GFDPFDLPSdvrtLARI.IYSAH.GGEIAI.AF
  598-  626 (33.03/23.76)	GVHIFSGPN....FAPVdNYQINvGSAIAApAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     449.69|     157|     169|     112|     273|      10
---------------------------------------------------------------------------
  112-  171 (49.38/36.77)	..............................................................................................................CRNFSA....VTWCG.KLNAIACASE.TCARIPSSTANPPFWIPIHIVIperpTESAVFNViADSP
  172-  340 (255.55/160.11)	RDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGQANLVRDASCWRREHEWRQDIAVVTKWLSGVSPYRWLSSKS.SALPNSN.STFEEKFLSQQSQTSARWpnflcvCSVFSSgsiqLHWSQwPPNQSGAASKwFCTSKGLLGAGPSGIMAADAII....TDSGAMRV.AGVP
  342-  445 (144.76/85.33)	VNPSTVVVWEVTPGPGNGFQAIPKTRLNHGILPSLNPPNWAGFAPLAAYLFSWQEYSISETKHGRKQTDQDFIDTVSlHCSPVSNfSAYVSPEVAAQSAATTTW........................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.33|      39|     570|     636|     679|      11
---------------------------------------------------------------------------
  636-  679 (57.52/47.31)	VWHdTSKDRTILKIIRVLPPAVP.SSQAKANSSTwERaiaER.FWW
 1213- 1253 (66.81/37.19)	VWK.TGLEGVWYKCIRCLRQTSAfASLVAANPPS.QN...DReTWW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.27|      16|      16|     809|     824|      12
---------------------------------------------------------------------------
  809-  824 (26.41/15.30)	QAYVDAILDLSSHFIT
  827-  842 (27.86/16.52)	RRYASFCRTLATHAVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.29|      16|      18|     767|     782|      15
---------------------------------------------------------------------------
  767-  782 (27.85/18.07)	GIESALINPSALLPEP
  787-  802 (28.44/18.64)	GETLGSIDPEAMAVEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11369 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNMVASPTQSSASPTSQGGQNGTTSSTG
2) MNELQQQHQQQEQQESVAAAATEEEEEEEEEKQPVVLVVAAEQTLEVSSNNNNHNSASPEKAEAVGCGEAEVPKNTEDPMDEDSVGPA
3) PTSSVVRSDEGQVARPGQLIPGPKGVEEGHAGRSRLGSGNA
844
1
991
876
88
1031










Molecular Recognition Features






MoRF SequenceStartStop




1) ELQQQH
2) ESVAAAATEE
3
15
8
24