<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11361

Description Uncharacterized protein
SequenceMDSEGKKFGRGQRELTGAVDLISHYKLVPHHEFFCKRALPLSIADTHYLHNVVGDTEIRKGEGMQLFQLIQNTSHSRDNDARIQPFDLDVLREAFQLRESAPVDLPPAEKGVPTIPGKLKIESKEKERKHKKHKDRDKDKDKDHKKHKHRHKDRSKDKDKDKEKEKEKEKKKDKTVHHESGGDHSKKHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDELGAIKVAG
Length227
PositionHead
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.04
Grand average of hydropathy-1.511
Instability index37.11
Isoelectric point9.51
Molecular weight26359.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11361
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.28|      19|      19|     125|     143|       1
---------------------------------------------------------------------------
  125-  143 (36.32/12.19)	EKERKH.KKH..KDRDKDKDKD
  179-  200 (24.96/ 6.24)	ESGGDHsKKHheKKRKHDGDED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.18|      15|      60|     144|     158|       2
---------------------------------------------------------------------------
  144-  158 (27.71/11.57)	HKKHKHRHKDRSKDK
  160-  174 (23.19/ 8.33)	KDKEKEKEKEKKKDK
  205-  219 (25.28/ 9.83)	HKHKKSKHKSSKIDE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11361 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRESAPVDLPPAEKGVPTIPGKLKIESKEKERKHKKHKDRDKDKDKDHKKHKHRHKDRSKDKDKDKEKEKEKEKKKDKTVHHESGGDHSKKHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDELGAIKVAG
97
227










Molecular Recognition Features






MoRF SequenceStartStop




1) DHSKKHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDELGAIKVAG
2) DKDKDHKKHKHRHKDRSKDKDKDKEKEKEKEKKKDKTVHHESG
183
139
227
181