<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11354

Description Med23 domain-containing protein
SequenceMMDQTQRPVASVTPSSRAYQFHPARAAIIDLFNLYLGRRRRQKSDDSIREPPNKTQKLFLSINRELPPRNEQFLLDFEQLHTQFGDQEQLRTVTESVLISLVVNCSGHAPRAEFILFALRSLCSIGYINWDSFLPSLLSSVCSAEMSVGQGSQAMLAVSSLSLSQSGMLPSSNVIPNSSNFQSSNPTSPSPTVHGVGSPAQSAIEPSSFSAMSPVKSSDIACTGHQSNTRVNISISDNAISSLRQLCCKIVLAGLQFNLKPVTHADIFYHMLNWLVNWDQRQQGVDDSDGVKSCRPDKALIEWLHSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTSSISVEGVANLRYSPITYPSVLGEPLHGEDLANCIQSGSLDWERALRCIRHALRTTPSPDWWKRVLLVASSYRHNTQGSIPGAVFTSDMICEATIDRIIELLRLTNSEINCWQEWLVFSDIFFFLIKSGCIDFVDFVDKLVSRLTEGDQNILRTNHVTWLFTQIIRAELVINALNSDARKVETTRKILSFHREDRSSDPNNPQSILLDFVSSSQNLRVWSLNTSIREYLNSEQIQKGKQIDEWWRQASKGDRMLDYMNMDDRSIGMFWVVSHTMTQPACEAVMNWLSSAGVTEFFPGSSLQPNDRITVMRETSPLPMSLLSGFSMNLCLKLLIQMEDALFAGPVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRSPALLSKPGVTLLVLEMVNYRLLPLYRYQGKSKTLMYDVTKIISTLKGKRGDHRVFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIITLAIIIKTRGIADAEHLLFLQTMLEQIMASSQHTWSEKTLRYFPALLRDALIGRTDKRGLAIQAWQQAEATVLHQCTQLLSPSADPTYVMTYSNHTFFQHRQYLCAGAWILMQGHPESINSANLARVLREFSPEEVTANIYTMVDILLHHIQIELQHGHSLQDILLKACANLAFFVWTHELLPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLYCMNRGPHEHWLYSGMHKRVELQKALGNHLSWKDRYPTFFDDIAARLVPVIPLIVYRLIENDAIEPADRVLAVYSQFFAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPVICPPLDYFATLLLGLVNNVIPPLNSSTKSGSMGDASNAVMRAPHNKTAAASQSGPPNASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQSSNGLHGGPNSAGQASGLPTSPSGGSTDSLGASRSTPSVSGINTSNFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHSHLYTEASRIIKESWWLTDGKRSLGELDSAAGYALLDPTWAAQDSTSTAIGNIVALLHAFFSNLPQEWLEGPHAIIKHLRPITSVAMLRIAFRIMGPLLPRLTNAHTLFNKTLSLLLSTMVDVFGRNSQSTAPVEASEIADLIDFLHHVIHYEGQGGPVQANSKPRPEVLALCGRASESLRQDVQHLLSHLKPDLNCSIYAATHPKLVQNPS
Length1610
PositionTail
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.08
Grand average of hydropathy-0.054
Instability index50.07
Isoelectric point6.61
Molecular weight180230.75
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11354
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.44|      28|     193|    1375|    1402|       1
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 1375- 1402 (53.07/28.23)	CQQLSCLLIQACGLLLAQLPPDFHSHLY
 1571- 1598 (51.36/27.10)	CGRASESLRQDVQHLLSHLKPDLNCSIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     308.74|      86|     312|     815|     903|       2
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  501-  565 (52.60/26.41)	VFSdifffLIKSGCI...DFV.....DFVDklVSRLTEGDQNIL...RT.NHV.TwlftqIIRAELVINALN.SDARKV.............................
  815-  902 (138.76/96.55)	VFR.....LAENLCM...NLILSL.RDFFS..VKREGKGPTEFT...ETLNRI.T.....IITLAIIIKTRGIADAEHLLFLQTMLEQImaSSQHTWSEKTLRYFPAL
 1130- 1218 (117.38/74.56)	VYR.....LIENDAIepaDRVLAVySQFFA..YH.....PLRFTfvrDILAYFyG.....HLPGKLIVRILNVLDLSKIPFSESFPQHI..SSSNPVICPPLDYFATL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.09|      17|      17|     105|     121|       3
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  105-  121 (31.32/16.34)	CS.GHAPRAEFILFALRS
  123-  140 (27.77/13.70)	CSiGYINWDSFLPSLLSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.64|      20|     966|     445|     500|       4
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  479-  500 (34.65/89.40)	IDRIIELLRLTNSeiNCWQEWL
 1448- 1467 (37.99/ 9.13)	IGNIVALLHAFFS..NLPQEWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.18|      16|      23|     294|     311|       5
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  294-  311 (27.48/22.53)	CRPdkALIEWLHSCLDVI
  320-  335 (30.70/18.18)	CRV..PFYELLRSGLQFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.81|      17|     193|     214|     248|       6
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  214-  232 (26.34/48.02)	PVKSSDIacTGHQSNTRVN
  261-  277 (34.47/12.44)	PVTHADI..FYHMLNWLVN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.53|      29|     311|      31|      59|       7
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   31-   59 (52.12/31.36)	LFNLYLG.RRRR.......QKSDDSIREPPNKTQKLF
  344-  380 (43.41/24.88)	LFTLILEiHRRRdmmamhmQMLDQHLHCPTFGTHRIL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.69|      11|      26|     170|     181|      13
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  170-  181 (16.36/12.57)	PSSNVIPNSSnF
  199-  209 (20.33/10.46)	PAQSAIEPSS.F
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.06|      22|     325|    1086|    1107|      15
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 1086- 1107 (43.13/29.66)	WLYSGMHKRVELQKALGNHL...SW
 1414- 1438 (35.93/23.42)	WLTDGKRSLGELDSAAGYALldpTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11354 with Med23 domain of Kingdom Viridiplantae
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