<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11348

Description DEAD domain-containing protein/Helicase_C domain-containing protein/HRDC domain-containing protein/RQC domain-containing protein
SequenceMTNHISLSNLSGGNRQKEKLPEDNWLQHANAHDHFSCQNKFLSSNFLFSLATQKLPAEGEMGARLMTCQIKTPQALPRSQIDKAWHVLSSLQLSCRTYTRPGKTVFVKNDSDDFSNDVRRSTFQSLSNTNKSSEYMRTNENFTESNVKINGPARNLGNPLSSTNVRVAEARKDSAIKVSIPSVVSNNRMSVSNDTLYARKTEESAKVLTDDIDDDDDDILKNIDVDQIVMDHYQSNCTPQPSVSKLPLITPTTDRGNFVRQDEICLPPELSSNCSHGMKVGHCSEGVNHLQEMKDRLIAISNELLDNAADLSPEQIEKLRQDRLQLNKQIQLFEIHIRDTERKKSQFSASTATCNFQYETPQAAPFRIDPMRFDAQVKLRNEPDGSDNWNSSSMPFSSLDRFGVSSGPGEREPYIPKYVEVNYIEGSHDQKWSSGNFPWAKKLEVSNKKVFGNHSFRPNQREIINATISGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSGNMEWTEQQEILRELNSDNCKYKLLYVTPEKVAKSDMLLRHLEGLNARDLLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLCYSVIPKTKKCLEDIDKFIKDNHFDECGIIYCLSRNDCEKVAEKLQEYGHKASFYHGTMDPVHRSFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVTEQGSFTPGYNRGNTANSGRVLETNTENLLRMVSYSENDVDCRRLLQLVHFGEKFDTANCGKTCDNCLKITSFIEKDVTGIAKQLVELVKSTGQQFSSSHILEVYRGSLSQIVKKHRHETLSLHGAGKHLGKGEASRVLRHLVTEDFLVEDVKKSEIYGSVSSVLKVNDSRAYNLCSGGQAITLRFPSYVKSGKPSKFQATPAKSSLPLGKLSPPQIDTPAQQQNGVNLHLAAKLYSALRMLRTILVKEAGEGVMAYHIFGNATLQQISKRIPRTKEELLEINGIGKAKINKYGDRLLETIESTIKEFYKTDKNSSSSNDSNDSAKRRREANGASNADIEEDDFTKSTGRSKKRASTIHNKVTEYNYANEPGYYNQLPDDDLDFEE
Length1181
PositionUnknown
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.07
Grand average of hydropathy-0.558
Instability index45.79
Isoelectric point7.71
Molecular weight132669.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11348
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     156.81|      71|     768|     106|     188|       2
---------------------------------------------------------------------------
  110-  140 (34.06/34.70)	.........................................................................................................................................................................................................................DSDDFSNDVRRSTFQSLSNTNKSSEYMRTNE
  149-  188 (50.68/27.11)	INGPARNLGNPLSSTNVR.......VAEARKDSAIKVSIPSV..VSNNR.......................................................................................................................................................................................................
  918-  966 (38.48/17.69)	LHGAGKHLGKGEASRVLRhlvtedfLVEDVKKSEIYGSVSSVlkVNDSR.......................................................................................................................................................................................................
 1135- 1165 (33.59/10.83)	.................................................aynlcsggqaitlrfpsyvksgkpskfqatpaksslplgklsppqidtpaqqqngvnlhlaaklysalrmlrtilvkeagegvmayhifgnatlqqiskriprtkeelleingigkakinkygdrlletiestikefyktdknssssndsndsakrrreangasnadiEEDDFTKSTGRSKKRASTIHNKVTEYNYANE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.67|      52|     767|     270|     324|       4
---------------------------------------------------------------------------
  270-  324 (76.40/59.12)	LSSNCSHGMKVGHCSeGVNHLQEMKDRLIAISNELLDnAADLSPEQIEKLrQDRL
 1041- 1092 (84.28/51.85)	LVKEAGEGVMAYHIF.GNATLQQISKRIPRTKEELLE.INGIGKAKINKY.GDRL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11348 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FYKTDKNSSSSNDSNDSAKRRREANGASNADIEEDDFTKSTGRSKKRASTIHNKVTEYNYANEPGYYNQLPDDDLDFEE
2) SLSNTNKSSEYMRTNENFTESNVKINGPARNLGNPLSSTNVRVA
1103
125
1181
168










Molecular Recognition Features






MoRF SequenceStartStop




NANANA