<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11346

Description Uncharacterized protein
SequenceMDSNNWRPNPPGGEPAMDTGDWRSQLQPDSRPRIVNKIMDTLKKHLPYTGHDGLNELNKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIANSLPSNSAANGNKAPDPASHGMPSQVHNQGQSLPLSLPVNQSQARQQLLSQNMQNNMASSGVQSSAGLPSGVSQNSGNSMGQAMPSNMFASSQRQMQSRQQVLPQQQQQQSQNPQQYLYQQQIQQQIMKNNKLQQGNLQHSLMQSHIQQQQQQQQQNLLQPAQLQSSQQSGMQTSSVVQPSMIQSAPLSNLQQNQQSSLQQSTPSMLQQHPQSVLRQPQQTQSTAVIHQQQTPMTQQSLMPQQQQQQQQQIMGQQSNTTNMQQNQLIGQQNSVGNMHQQQQQRLHNNLPSLQQQQQQQLMAQHNNLSNLHQQQLGPQSNISGLQQQQQQLLGTQSGHSSMQTNQHSVHMLQQSKGPLQQQAQQSAPNMLPTQGHQSQPQPQQQQLMSQIQSQPAQLQQQLGLQQQSNLLQRDMQQRLQASGPASGTLFQPQNVIDQQKQLYQSQRALPDTSSTSLDSTAQTGHANGGDWQEEVYQKIKVMKETYLPELDEMYQKIAAKLQQHDSLPQPPKSDQLEKLKVFKTMLDRIISFLQVTKETVIPSFKEKLGLYEQQIKNFINSNRPRKPISSLQQGQLPPPQGPLPPSQMHSMQQSQSQITQVQPHENQMNPQLQSMNLTGSGTTMQQNNMTNLQHNSLSSLSGVSTAQQNIMNSLQQGSNLDSSQGNQMSSLQQVAVGSLQQNPVSIPQQTNINTLSSQSGMNVLQQNMNPLQSNSNMLQHPQKQQQEQQISQTQAQQIKQQYQQRQMQHQLMQKKIFQQQQQQLHQQSKQQLPGLQTHQMPQMHPMTDVNDMKIRQGISVKPAVFQQHLSASQRSAYPHQQLKPGASFPTSSPQLLQAASPQIHQHSSPQVDQQNLISSLTKTGTPLQSTSSPFVVPSPSTPLAPSPMPGDSEKPVSAISSLSSAGNIGHQQTTAPQTAAPSLAIGTPGISASPLLAEFISPDGNHGNPLTTISGKSSATEQPLERLLKAVKSMSAKALGASVNDIGSVVSMIDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFITQDGMTGTRKMRRYTNAVPLNVVSSDSFRQLTGSETSELESTATSRIKRPRLEASHALLEEIREINQRLIDTVVDISDEDVDPVATAAAAEGGEGTIVKCSYSAVALSSNLKSQYSSAQMSPIQPLRLLVPANYPNCSPILLDKFPVEVSKEYEDLSVKAKSRFSIFLRSLSQPMSLKEIARTWDVCARTVISEHAQQSGGGSFSSKYGTWENCLTAT
Length1341
PositionTail
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.03
Grand average of hydropathy-0.794
Instability index73.82
Isoelectric point9.37
Molecular weight148016.85
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11346
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.54|      22|      77|     344|     371|       7
---------------------------------------------------------------------------
  345-  367 (39.34/ 8.20)	QQQQIMGQQS..NTTNMQQNQLiGQ
  855-  878 (34.20/ 7.72)	QQQQQLHQQSkqQLPGLQTHQM.PQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.93|      15|      15|       1|      15|      10
---------------------------------------------------------------------------
    1-   15 (33.02/21.53)	MDSNNWRPN.PPGGEP
   17-   32 (26.91/15.83)	MDTGDWRSQlQPDSRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     133.50|      26|      29|     214|     239|      11
---------------------------------------------------------------------------
  158-  183 (30.96/ 6.16)	S....GVQSSAGLPSGVSQ..NSGNSMGQAMP
  209-  238 (37.93/ 9.79)	SqnpqQYLYQQQIQQQIMK..NNKLQQGNLQH
  239-  264 (32.08/ 6.74)	SlmqsHIQQQQQQQQQ......NLLQPAQLQS
  682-  709 (32.53/ 6.98)	S....QMHSMQQSQSQITQvqPHENQMNPQLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.46|      28|      30|     512|     540|      12
---------------------------------------------------------------------------
  512-  540 (46.59/25.22)	QQRL............QASGPASGTLFQPQNViDQQKQLYQ
  542-  573 (27.70/ 9.43)	QRALpdtsstsldstaQ.TGHANGG........DWQEEVYQ
  590-  615 (37.17/15.43)	YQKI............AAKLQQHDSLPQPPKS.DQLEKL..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     279.70|      53|      53|     923|     975|      14
---------------------------------------------------------------------------
  435-  468 (34.26/ 8.12)	........HSSMQ.TNQHSVHMLQQSKG.PLQqqaQQSAPNMLP...............
  898-  933 (52.40/16.69)	...........PAVFQQHL.SASQRSAY.PHQ...QLK.....PGASFPTSSP..QLLQ
  934-  979 (76.68/28.16)	AASPQIHQHSSPQVDQQNLISSLTKTGT.PLQ...STSSPFVVPSPSTP.......L..
  980- 1026 (63.78/22.07)	APSPMPGDSEKP.VSA...ISSLSSAGNiGHQ...QTTAP.QTAAPSLAIGTP..GI..
 1027- 1065 (52.58/16.78)	SASPLLAEFISPD..........GNHGN.PLT...TISG.....KSS.ATEQPleRLLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.87|      16|     135|     191|     207|      15
---------------------------------------------------------------------------
  191-  207 (27.28/10.04)	QRQMqSRQQVLPQQQQQ
  329-  344 (30.60/ 8.37)	QTPM.TQQSLMPQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.12|      13|      16|    1102|    1116|      16
---------------------------------------------------------------------------
 1102- 1116 (18.79/16.15)	RASVGEDlvAMTKCR
 1120- 1132 (24.33/14.22)	RNFITQD..GMTGTR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.42|      13|      16|     101|     113|      17
---------------------------------------------------------------------------
  101-  113 (22.63/ 9.19)	LPSNSAANGNKAP
  120-  132 (24.79/10.80)	MPSQVHNQGQSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.90|      21|      37|     715|     736|      19
---------------------------------------------------------------------------
  711-  731 (38.08/19.30)	MNLTGSGTTMQQNNMTNLQHN
  804-  824 (35.82/13.24)	MNPLQSNSNMLQHPQKQQQEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.66|      16|      16|    1244|    1259|      21
---------------------------------------------------------------------------
 1244- 1259 (29.29/21.71)	SPI..QPLRLLVPANYPN
 1261- 1278 (23.37/15.54)	SPIllDKFPVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.39|      16|      20|      48|      67|      30
---------------------------------------------------------------------------
   48-   63 (27.79/24.73)	YTGHDGLNE.LNKIAVR
   69-   85 (20.59/ 6.58)	YTAATSQSDyLRKISLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11346 with Med15 domain of Kingdom Viridiplantae
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