<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11344

Description Med25_VWA domain-containing protein (Fragment)
SequenceMAEKQLIVAVEGTAAMGPYWQAILSDYLEKTIRCFCGNDLPGQASLCFFFFLQAVVELSLVMFNVHGPYSACLVQRSGWTKDPDTFLQWLSALPFAGGGFNDAAIAEGLAEALMMFAITSNGTQTQQTVNGQRHCILVAASNPYPLPTPVYRPQMQNLEQSENIEAHSESRLSDAETVAKSFAQCSVSLSVICPKQLPKLRAIYDAGKRNPRTADPAVDNVKNPQFLVLISENFMDARAALSRPGVTSLATNQSPVKMDIAHVPAATGPPPTSMPSVNGSVMNRQPISVGNVPTATVKVEPSTATSMGTGSAFPHIPSVPRATSQAAPSLQASSPSATPQEISTNGDNVPELKPIVSNMPQSLRPVAPSAANVSILNHLSQARQAMNSAALTGGNSIGLQSMGQTPMAMHMSNMISSGMGSSVPPASTVFPSGQSGSINVSGTLTVTSQVVQNSGLGSFTSASSNTAGNSNIGISQPMSNIQGGVSMGQSAPGMNQGNLSSAQMVQSGGMGMNQNVMSGLGPSGVTYGTGTMIPTVGMPQQGQSGMESIGVNNNLAANMLSQQTSSTLQAAQSKYVKVWEGSLSGQRQRQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNSHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISGQQQQQQMQQHQQMQSQLQQQHLPQMQQQQQLSQMQQQQQLPQMQQQQQLPQLQQQQQLPQLQQQQLPQQQQLSQLQQQQQQQQQQQLPQLQQQQQMVGMGQAYVQVPGRSQLVSQGQVGSQGPPNLPGGGFM
Length831
PositionUnknown
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.05
Grand average of hydropathy-0.300
Instability index60.70
Isoelectric point8.65
Molecular weight88927.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11344
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     187.77|      26|      26|     744|     769|       1
---------------------------------------------------------------------------
  711-  737 (51.55/16.20)	QMqSQLQQQHLPQMQQQQQLSQMQQQQ
  738-  755 (40.06/10.94)	QL.P........QMQQQQQLPQLQQQQ
  756-  778 (49.70/15.35)	QL.PQLQQQQLPQQQQ...LSQLQQQQ
  779-  802 (46.46/13.87)	Q...QQQQQQLPQLQQQQQMVGMGQAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     229.63|      51|      52|     407|     457|       2
---------------------------------------------------------------------------
  302-  346 (47.35/17.63)	.....STATSMG..TGSAFPHIPSV.PratSQAAPSLQAS..SP.SATPQEISTNG..
  353-  392 (45.24/16.49)	......KPIVSN..MPQSLRP...VAP...S..AA..NVSilNHLSQARQAMNSAALT
  407-  457 (91.22/41.22)	MAMHMSNMISSG..MGSSVPPASTVFP...SGQSGSINVS..GTLTVTSQVVQNSGLG
  474-  509 (45.83/16.82)	ISQPMSN.IQGGvsMGQSAPG....MN...QGNLSS............AQMVQSGG..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.51|      20|      51|     545|     569|       7
---------------------------------------------------------------------------
  545-  569 (28.83/30.67)	GMESIGVNNNLAANMlsqqtSSTLQ
  599-  618 (37.68/25.53)	GYRSASASETLAANW.....PPTMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.60|      13|     111|     578|     590|       8
---------------------------------------------------------------------------
  578-  590 (24.97/10.89)	VWEGSLSGQRQRQ
  692-  704 (24.62/10.64)	VFKPQISGQQQQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11344 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLGSFTSASSNTAGNSNIGISQPMSNIQGGVSMGQSAPGMNQGNLSSAQMVQSG
2) LSRPGVTSLATNQSPVKMDIAHVPAATGPPPTSMPSVNGSVMNRQPISVGNVPTATVKVEPSTATSMGTGSAFPHIPSVPRATSQAAPSLQASSPSATPQEISTNGDNVPELKPIVSNMPQSLR
3) QAMNSAALTGGNSIGLQSMGQTPMAMHMSNMISSGMGSSVPPASTVFPSGQSGSI
455
241
384
508
364
438










Molecular Recognition Features






MoRF SequenceStartStop




NANANA