<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11341

Description WW domain-containing protein/FF domain-containing protein
SequenceMANNFQSSGAQYRPMVPSQQGQQFIPAASQHFHPVGQGVSSSNVGMPPVQTQQLQFSQPMQQLPPRPSQLVHGTPLSQPVPVPYGSQQPHQPGPALSSYMPGVGAPGVPVMSSYNFVPPYGQPQNTVSMSSQYQPISQMHAPVAPAAGQPWLSAGSQSAAAAIPVQHAMQPPATSSSDPAVNVPSLSQPSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWSIPEELKLAREQAQSAASQGIQSEVGVTSHAEAAVTVTSSEKPNASNSLSFSISSTFSAVASSPIPVSPIVAIPNPPPAVVSGSPTTNVAQPAVTSAAGGPPPELSVTPSPIAVAGSTGVSDALVDARTTATTKVSGFDNLVSQDAANSVDGASMQDIEEAKKGMAVAGKINVTPSEEKTVDDEPLVYANKQEAKNAFKALLESANVQSDWTWEQAMREIINDKKYGALKTLGERKQAFNEYLGQRKKLEAEERRLRQKKAREEFTKMLEESKELTSSIKWSKAVTMFENDERFKAVERGRDREDLYDNYIVELERKEKEKAAEENRRNIAEFRKFLEACDFIKVNSQWRKIQDRLEDDERCLRLEKIDRLLIFQDYIRDLEKEEEELKKLQKEQLRRTERKNRDEFRKLMEEHVDAGILTAKTHWRDYCLKVKDLPQYHDVASNTSGSLPKELFEDIAEELEKQYHEDKTRIKDAMKLKKISVVSTWTFDDFKAAVFEDVGSSLISDINLKIVYEELLERAMEKEEKEAKKRQRLADDFTKLLYTFKEITASSDWEDCKPFFEESQEYRSIGEESFRKEIFEDYIELLQEKAKEKERKREEEKAKKEKEREDKERRKEKERKEKEREREKEKGKDRMKKDEADGENVDVIDSYGHKEDKRKEKEKEKEKEKDKEKDRKHRKRHQSDDVSSDKDEKEESKKSRRHGSDRKKSRKHAYSPESDSESRHRRHKRDHRDGSRRNGGHEELEDGELGEDVCYRKFRAM
Length1021
PositionUnknown
OrganismCephalotus follicularis (Albany pitcher plant)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Oxalidales> Cephalotaceae> Cephalotus.
Aromaticity0.07
Grand average of hydropathy-1.048
Instability index56.22
Isoelectric point6.41
Molecular weight116453.61
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11341
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     193.84|      38|      38|     870|     907|       1
---------------------------------------------------------------------------
  870-  907 (63.84/27.36)	DKERRKEKERKEKEREREKEKGKDRMKKDEADGENVDV
  909-  946 (55.91/23.14)	DSYGHKEDKRKEKEKEKEKEKDKEKDRKHRKRHQSDDV
  952-  981 (33.68/11.30)	EKEESKKSRRHGSDR....KKSRKHAYSPESDSE....
  982- 1013 (40.41/14.89)	SRHRRHKRDHRDGSR...RNGGHEELEDGEL.GEDV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     477.66|      64|      65|     521|     584|       2
---------------------------------------------------------------------------
  455-  512 (74.13/39.41)	.F.KALLESAN...VQSDWTWEQAMREIIN.......DKKYGAL...KTLGERKQAFNEYL.......GQRKKL.E......AEER.R
  521-  584 (100.73/56.07)	EFTKMLEESKE...LTSSIKWSKAVTMFEN.......DERFKAV...ERGRDREDLYDNYI.......VELERK.EKE..KAAEEN.R
  589-  654 (84.22/45.73)	EFRKFLEACDF...IKVNSQWRKIQDRLED.......DERCLRL...EK.IDRLLIFQDYI.......RDLEKE.EEElkKLQKEQlR
  663-  729 (79.35/42.68)	EFRKLMEEHVDagiLTAKTHWRDYCLKVKD.......LPQYHDVasnTSGSLPKELFEDIA.......EELEKQ.YHE.....DKT.R
  735-  791 (59.52/30.25)	KLKKI...SVV...STWTFDDFKA.AVFEDvgsslisDINLKIV........YEELLER..........AMEKE.EKE....AKKR.Q
  796-  865 (79.71/42.90)	DFTKLLYTFKE...ITASSDWEDCKPFFEE.......SQEYRSI...GEESFRKEIFEDYIellqekaKEKERKrEEE..KAKKE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.65|      38|      38|     192|     229|       3
---------------------------------------------------------------------------
  192-  229 (74.14/54.59)	SD.WQEHTSADGRRYYYNKR.TRQSSWEKPLELMTPIERA
  232-  270 (64.46/46.32)	STvWKEFTTPEGRKYYYNKV.TKQSKWSIPEELKLAREQA
  273-  300 (27.04/14.36)	AA.SQGIQSEVGVTSHAEAAvTVTSS.EKP..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     255.78|      32|      32|      70|     101|       4
---------------------------------------------------------------------------
   15-   38 (37.40/15.01)	M.........VP..SQQGQQFIPAASQH.......fH.........P...V....GQG
   39-   79 (41.83/17.52)	VsssnvgmpPVQTQQLQFSQPMQQLPPR.P.sqLV.H.......GTP...L....SQP
   80-  113 (57.23/26.24)	V........PVPYGSQQPHQPGPALSSYMP.gvGA.P.......GVP...V....MSS
  117-  158 (36.20/14.34)	V........P.PYG..QPQNTVSMSSQYQPisqM..HapvapaaGQP...WlsagSQS
  163-  189 (46.54/20.19)	I........PV....QHAMQP.PATSSSDP...AV.N.......VPS...L....SQP
  322-  349 (36.58/14.55)	I........PVSPIVAIPNPP.PA.........VV.S.......GSPttnV....AQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.71|      24|      30|     392|     419|       6
---------------------------------------------------------------------------
  392-  419 (31.93/34.30)	VSGFDNlVSQDAANSVDG.....ASMQdieEAK
  424-  452 (34.79/22.49)	VAGKIN.VTPSEEKTVDDeplvyANKQ...EAK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11341 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APAAGQPWLSAGSQSAAAAIPVQHAMQPPATSSSDPAVNVPSLSQPSLSDWQ
2) IPEELKLAREQAQSAASQGIQSEVGVTSHAEAAVTVTSSE
3) KERKREEEKAKKEKEREDKERRKEKERKEKEREREKEKGKDRMKKDEADGENVDVIDSYGHKEDKRKEKEKEKEKEKDKEKDRKHRKRHQSDDVSSDKDEKEESKKSRRHGSDRKKSRKHAYSPESDSESRHRRHKRDHRDGSRRNGGHEELEDGELGEDVCYRKFRA
4) MANNFQSSGAQYRPMVPSQQGQQFIPAASQHFHPVGQGVSSSNVGMPPVQTQQLQFSQPMQQLPPRPSQLVHGTPLSQPVPVPYGSQQPHQPGPALSSYMPG
5) VAIPNPPPAVVSGSPTTNVAQPAVTSAAGGPPPELSVTPSPIA
144
259
853
1
328
195
298
1020
102
370










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNK
2) RKHRKRHQS
3) VCYRKFRA
243
935
1013
250
943
1020