<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11330

Description Sensitive to freezing 6
SequenceMNQQNPEEEVSLVNNSGGGGIIEAPAIVEEKEEEGLQQKQEETIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDGSNSTASPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFPQRNADVSSQKLQTGATSKLEEVNSAKPTPALNRIEDAQGFRGAQLGTGVKGIDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMILTDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRWVYCCPMCGGTWVRVV
Length1268
PositionTail
OrganismArabidopsis thaliana (Mouse-ear cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.231
Instability index46.45
Isoelectric point5.82
Molecular weight137050.73
Publications
PubMed=10617198
PubMed=27862469

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11330
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.48|      25|     249|     178|     204|       1
---------------------------------------------------------------------------
  178-  204 (43.75/36.80)	SPTSCPRAllIANFHGRITIWTQPTQG
  602-  623 (32.17/19.58)	.PTFSP....VENYQINVGSAIAAPAF
  624-  634 (17.56/ 6.63)	SPTSCCSA..........SVW......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     614.71|     210|     422|     210|     458|       2
---------------------------------------------------------------------------
  227-  454 (314.11/250.83)	.......VVTKWLTGASPYrwlssKPSSGTNAKSTFEEKFLSqSSESSARWPNFLCVCSVFsSGSVQIHwSQWPSNQGSTAP..KWFSTKKgLLGAGPSgimaADAII.TDSG...AMHVAGVPIVNPSTIVV..WEVTPGPGNGLqaTPKistGSRVPPSLSSSSWtgfAPLAAYLfSWQEYLISEIKQGKKPSDQDSSDAISLSC.........................SPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPT
  455-  572 (136.70/69.25)	RGGSviaVVIVEGQYMSPY.....DPDEGPSITGWRVQRWES.SVQPVVLHQIFGNPTSNF.GGQVPTQ.TVWVSRVDMSIPptKDFKNHQ.VAAAGPS....VDAPKePDSGdekANKVVFDPFDLPSDI.........................................................................................................................................
  769-  876 (130.33/60.62)	............................................................................................................................LVNPSALVFepWRVDGETITGI..NPE...AMAVDPALVSSIQ...AYVDAVL.DLASHFITRLRRYASFCRTLASHAASAGT.........................G..SNRNNVTSPTQNASSPATPQVGQPTTTTTTTAT
  879-  932 (33.56/11.07)	SSGS...........................................................................................................................................................................................................shvqawmqgaiakisssndgsnstaSPISG.....SPTFMPISINTGTF.PGTPAV.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.84|      22|     532|     668|     690|       3
---------------------------------------------------------------------------
  668-  690 (40.98/22.89)	RAIAERFWWSLLVGVdW...WDAVGC
 1203- 1224 (40.91/18.87)	RDVVTATWKTGLEGV.W...YKCIRC
 1240- 1256 (26.95/10.22)	PNPNERETW.......WtsrW..VYC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11330 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGTGSNRNNVTSPTQNASSPATPQVGQPTTTTTTTATTNSSGS
840
882










Molecular Recognition Features






MoRF SequenceStartStop




1) EAPAIVEEKEEE
23
34