<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11273

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSDRASSASFRVGPPSPASPAPESLKETPQHPTISSDQIPQTPTSPPLMSVSAHNYATHFVPSQTSPSQATSQPTSLSSPPSSAPMSTQPSQQPVVGGSANSFPTPASSVSGHIPGTTSFDEPDAPAKSMGSGPSEGGVVPAGGAFATAQRAEHRRTDHDRQPGGDSEGAVRDYAATGLPVHGDAMDIDREVPGSSDGSMSLESLQHDFSSAFHLCKSSYTATGPDPSLDLISLYGLGPVAKSVARMDPVTGEKINRLRKSYEGKLKGLGLAGRNKPVKHEPGAPGGLIQMTMWPEEEWQNQKVFGKEIKVADMDSALHALQLKAMKMEPGAVPNSEQWEDVLGHEKPSKHAGGGGDTGKKAVAPPNGARMQANGTPGPGVSDAERSRPSRGRKRHYDDNSFVGYGEGYADDDDDGAFYSASDGMGKKKRKKVGPSDDDGALGF
Length444
PositionHead
OrganismAspergillus aculeatus ATCC 16872
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus> Aspergillus subgen. Circumdati.
Aromaticity0.05
Grand average of hydropathy-0.738
Instability index54.74
Isoelectric point5.88
Molecular weight46346.51
Publications
PubMed=28196534

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP11273
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     101.46|      20|      20|      62|      81|       1
---------------------------------------------------------------------------
   23-   47 (25.12/ 8.47)	ESLKETP.qhptiSSDQIPQT.......PTSPP
   49-   74 (28.82/10.92)	MSVSAHNyathfvPSQTSPSQ.......ATSQP
   75-  104 (24.08/ 7.79)	TSLSSPP...ssaPMSTQPSQqpvvggsANSFP
  105-  127 (23.43/ 7.35)	TPASSVS...ghiPGTTSFDE.......PDAPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.47|      15|      68|     273|     287|       2
---------------------------------------------------------------------------
  273-  287 (30.60/16.15)	GRNKPVKHEPGAPGG
  344-  356 (26.29/12.69)	GHEKPSKHAGG..GG
  365-  378 (21.57/ 8.90)	PPNGARMQANGTPG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.45|      24|      68|     169|     200|       3
---------------------------------------------------------------------------
  144-  167 (44.69/21.25)	GAF....ATAQRAEHRRTDHDRQPGGDS
  169-  196 (37.76/36.20)	GAVrdyaATGLPVHGDAMDIDREVPGSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11273 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALQLKAMKMEPGAVPNSEQWEDVLGHEKPSKHAGGGGDTGKKAVAPPNGARMQANGTPGPGVSDAERSRPSRGRKRHYDDNSFVGYG
2) DDDGAFYSASDGMGKKKRKKVGPSDDDGALGF
3) MSDRASSASFRVGPPSPASPAPESLKETPQHPTISSDQIPQTPTSPPLMSVSAHNYATHFVPSQTSPSQATSQPTSLSSPPSSAPMSTQPSQQPVVGGSANSFPTPASSVSGHIPGTTSFDEPDAPAKSMGSGPSEGGVVPAGGAFATAQRAEHRRTDHDRQPGGDSEGAVRDYAATGLPVHGDAMDIDREVPGSSDGSMSLES
320
413
1
406
444
204










Molecular Recognition Features






MoRF SequenceStartStop




1) SFVGYGEGYADDDDDGAFYSASDGMGKKKRKKVGPSDDDGAL
401
442