<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11224

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSDSFSLPLRPIIEKRDRPDSLPRDIAQINAQWGSFRELNETKLREKIEEDKNKDPWEEDDSGDKDAIDLDASEQKDQLYKRRAEIINFALQAHMETAFALDFISLLLSKHNARQAEMSMSQFLKGAIPLGTLTAEVVNPPPRPDSTLKDIKSVSRGWRLQNFSSAANKLLNAGSRLETEVNSETKYWNEVLAVKEKGWKVCRLPREGQALAVQYGFLEATPIFRDRGLAALRRTDDGSLLLDKGLIPGKAKGVRVRVKQGNRVVGCSKVCRPPEGAESIESRILQARDTVFEEELFYEMMREARILGNQGVTTRQNLVEVPVSGEQELLLDLVDWDQDHDPDVAASGEQDIFADAVAHSIRILLAYAHRQNLRRRTQPPPPLVPKRRPVPEYHILRPIMAYLQHKSHLEWLKSFMDDVRNVLESAGIKCEFHETQFSSIGALQPSIQVPKVEALARVFLAPFESTFSGTLVDTQSSFQVRLRTSPVVPPVGTFYDISFKHPPFPDVLSPGRVGLQDEVSSMITHYCLLDIVAAISQNSDKQSAGEISWEALFPHHGQLRDPTDERRKMIVSLSREELSIKAHFLALGEGYGNRSPKMSETWKPEPRESRPSLAEFVSQASQLSSW
Length626
PositionHead
OrganismAspergillus sydowii CBS 593.65
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus> Aspergillus subgen. Nidulantes.
Aromaticity0.07
Grand average of hydropathy-0.469
Instability index55.88
Isoelectric point6.04
Molecular weight70643.35
Publications
PubMed=28196534

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11224
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.17|      15|      38|     359|     373|       1
---------------------------------------------------------------------------
  359-  373 (26.68/19.10)	HSIRILLAY.AHRQNL
  394-  409 (24.49/16.98)	HILRPIMAYlQHKSHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.51|      54|      66|     200|     258|       2
---------------------------------------------------------------------------
  200-  258 (74.53/70.73)	KVCRlPREGqALAVQYGFLEA.TPIFRDRGLAALRRtdDGSLLLDKGlIPGKAKGVRVRV
  269-  323 (88.98/61.33)	KVCR.PPEG.AESIESRILQArDTVFEEELFYEMMR..EARILGNQG.VTTRQNLVEVPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.58|      46|     365|      93|     145|       3
---------------------------------------------------------------------------
   93-  145 (69.27/57.74)	AHMETAFAldfiSLLLSKHNARQAEMSMSQFLKgaiPLGTLTAEVVNPPPRPD
  461-  506 (83.31/51.04)	APFESTFS....GTLVDTQSSFQVRLRTSPVVP...PVGTFYDISFKHPPFPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11224 with Med17 domain of Kingdom Fungi
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