<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11223

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMAMRTTQSKQAQAQAQSQWKTFFHRCLLHRIDAAEFRELSKLLFQRYPINDAPLMDALLSTRVAASAVKWDPLLPLYIDSLCKMGHVRISTVLTCLLKCSSLHDKPESGVEAAPDRGDADANATSASEKQKDDSASKAKCYTLMTDSRVVQDVMLAISTGATAKMPLLEVINAFSAVADWVQAIVGWHNSLLGAGQPVGMMGTPDGVLLFESVGILFAALAGTAKGLEVLSADTHEALKVRLGQALLACLPLCEDVSPPLRNRLDALQKEFNLYGQPPSKLEVSMMDNVNVNALNFEPSVIDGPTINSRAGLYVYINAMLVGRPLVDDSILLNYLLNRYAGHYEALIEEIITATFDVLSNAMYRKESSRTMLLLRSFLVNKLPPFFSTMLSISMVTLPMEVCISHALSRIDPNTFPSFSQMFSMQGNTALSDVRQEFLFSCASHKLIPEASIERLLGENPMQTLPVGGSFVKDELVAQINANHERAEQLISGIESTEGNAGAIVGAITEVMHNLCIQKETMTLKNICNSLSRRPQSLDIMLLFRSPKQILQPLCTLLDAWHWDEDQGESQPVYDEFGSILLLVLTFKYRYDLRPFDLGITSSNSFILKLIERGSSSLKLDELSEKQNKNLGEWIAALFIAEGISEETMSACSPQEFYMLVSTLFRQSLGACEAGKLEFDTLKGGFEYLLEPFLLPSLVVALTWLGNHIWESEQDPTIPLKTLQSLVTPSSISGEAREIHLTVLNITARSLEEQLKDVRTRHSNRTDIKPILDALEPCLSFQRTGSCHKSELDTWATHTPGGLLGSIRNTFQSLVLWSTSPDVSMAPPSYTHRPITTAIRTLGATRVLTALLDELLKLQTESTNTNASAPDIALDIAATLISAPLAESYTVDQSTHHPPSASSKEPTPRYAPLTLRDALNLLHENIPKLSEKDPLRAELAVRLYRRVNNLLAPPTQVHHHHHHHDPNLDMNMGINMNMNNIIDNMNLDVGDVNVDTDNPSQNMNMDTNINDQGQLQGQGQGQNVTDPEHANLNQIMGNAAAAVGMDMDMNNMNSMNVNVNMGRGGDGMEGLGLGVGEGDQSIDDVLNAAEMNPEFLDLDMEGMF
Length1103
PositionTail
OrganismAspergillus sydowii CBS 593.65
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus> Aspergillus subgen. Nidulantes.
Aromaticity0.06
Grand average of hydropathy-0.117
Instability index44.50
Isoelectric point5.03
Molecular weight121367.23
Publications
PubMed=28196534

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11223
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.77|      32|      68|     966|    1003|       1
---------------------------------------------------------------------------
  966- 1003 (51.75/45.05)	NLDMNM.......GINMNMNNiIDNMNldvgdVNVDTDNPSQNMN
 1030- 1068 (56.02/32.91)	NLNQIMgnaaaavGMDMDMNN.MNSMN.....VNVNMGRGGDGME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.52|      61|      68|     791|     857|       2
---------------------------------------------------------------------------
  796-  857 (100.23/66.35)	THT.......PGGLLgSIRNTFQSLVL.WSTSPDVS.MAPPSYTHRPITTAIRTLGATRVLTALLDELLKL
  859-  928 (89.29/45.06)	TEStntnasaPDIAL.DIAATLISAPLaESYTVDQStHHPPSASSKEPTPRYAPLTLRDALNLLHENIPKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.13|      47|      71|     419|     466|       6
---------------------------------------------------------------------------
  419-  466 (75.73/56.02)	SQMFSMQGNT.ALSDVRQEFLFS.CASHKLIPEASIERLLGENPmQTLPV
  491-  539 (70.40/46.76)	SGIESTEGNAgAIVGAITEVMHNlCIQKETMTLKNICNSLSRRP.QSLDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11223 with Med5 domain of Kingdom Fungi
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