<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11158

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSDRASSASFRVGPPSPSSPAAGALKQNQLPAPLSDRIPQTPTSPPLMSVSAQNYATNFVSSQASPNQATSQSATLSSPSSSAPMSTQASQQPTVGTANSFPTPASSVSGHFPGATSFDDSEHTDKPMGSAVPDTGAQAANMNAAAIQQAEHRRTDHDRHTEGINMEVGVRDFAANNGGDAMDIDSEAPASSSEKINRLRKSYEGKLKGLGLAGRNKPVKNEPGAPGSLRHMTMWPEEEWQNQKVFGKEIKVADMDSALQNLQMRAMKMEPGTVPNNEYWEDVLGHEKPSKHAGGDASKKGVAPPPNGVRISQPNGTPAPVSDQERARPSRGRKRHYDDNSFVGYGEGYADDDDDGAFYSNSEGMGKKKRKKDHVSKISTPLPDRGGSYGVDPTKVSNTDIPYELHYAEKMTRYLYKHTPDPSPTLQLAIRAQHLKRWEVPRSTYPDGKVGYYSWRTAVARRQAEIAVQVCLESGIGEAEAERVGRLIRKEGLKGGDDAEAQILEDVACLVFLDDQFEKFKENYERKKVVEILRKTWGKMSERGRGLALELQMGEEANELVKEALMG
Length567
PositionHead
OrganismAspergillus tubingensis (strain CBS 134.48)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.06
Grand average of hydropathy-0.816
Instability index48.41
Isoelectric point6.40
Molecular weight61681.85
Publications
PubMed=28196534

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP11158
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.02|      34|      44|     204|     237|       1
---------------------------------------------------------------------------
  204-  237 (60.49/36.94)	EGKLKGLGLAGRNKPVKNEPGAPGSLRHMTMWPE
  249-  282 (59.53/36.24)	EIKVADMDSALQNLQMRAMKMEPGTVPNNEYWED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.82|      24|      24|      14|      37|       2
---------------------------------------------------------------------------
   14-   37 (41.81/23.30)	PPSPSSPAAGALK.QNQLPAPLSDR
   39-   63 (35.29/18.43)	PQTPTSPPLMSVSaQNYATNFVSSQ
   65-   86 (27.72/12.77)	SPNQATSQSATLS.SPSSSAPMS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.55|      11|      28|     115|     125|       3
---------------------------------------------------------------------------
  115-  125 (20.24/14.61)	ATSFDDSEH..TD
  144-  156 (14.31/ 8.22)	AAAIQQAEHrrTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.44|      12|     136|     169|     181|       5
---------------------------------------------------------------------------
  169-  181 (19.20/15.02)	GVRdFAANNGGDA
  308-  319 (23.24/12.96)	GVR.ISQPNGTPA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11158 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDDGAFYSNSEGMGKKKRKKDHVSKISTPLPDRGGSYGVDPTKV
2) DSALQNLQMRAMKMEPGTVPNNEYWEDVLGHEKPSKHAGGDASKKGVAPPPNGVRISQPNGTPAPVSDQERARPSRGRKRHYDDNSFVGYG
3) MSDRASSASFRVGPPSPSSPAAGALKQNQLPAPLSDRIPQTPTSPPLMSVSAQNYATNFVSSQASPNQATSQSATLSSPSSSAPMSTQASQQPTVGTANSFPTPASSVSGHFPGATSFDDSEHTDKPMGSAVPDTGAQAANMNAAAIQQAEHRRTDHDRHTEGINMEVGVRDFAANNGGDAMDIDSEAPASSSEKINRLRKSYEGKLKGLGLAGRNKPVKNEPGAPGSLRHMTMWPEEEWQNQKVFGKEIKVAD
353
256
1
396
346
254










Molecular Recognition Features






MoRF SequenceStartStop




NANANA