<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11149
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDVAYICEWDRRPRTSHCPSIPLVCAWSCRNLIAFTTDQRNEEEKDITNLIHILDTEHPWDVYSINSGHQEVITCLEWDQSGSRLLSADADGRIKCWGMTDHLANSWQNLVGSEVDGDPIVALSWLHNGVKLALHVEKSGVSSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPNGQVLTATESLCRLRCRVALADIAFTGGGNIVVATCDGSSTSPVQFYKVCVSVVSEKCKIDTEILPSLFMRCTTDPARKDKFPAVTHLKFLARDMSEQVLLCASNQCSSIAECWSLRKEGLPLNNIFQQLSPAVSDKQPMILKWRILSATNELERVSAVALPKLPISLTNTDIKVASETKFYPGLGLALAFHDGNVQIVHRLSLQPMAVLYGSSLRPSEEPSLKRQRSPTPCIHFKALQMSWTSLALVGLDTQGKLSILRVSPSMGHSLDMSTSLRHLLFLLEYCMVTGYDWWDILLHVQPGMVHNLVEKLNEEYTRQNAALQQVLSTRILAMKASLCKLSQTTVTRVCDYHAKLFLISISCTLKSLLRPHVLNTPDKSPGDRLTEICNKFTDTDIDKVMINLKTEEFVLDMPTLQSLQQLIQWLGDFVLYLLVSLPNQGSSVRPGHSFLRDGASLGTLREMMVMIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTRLWLCCPPHNQRLIT |
Length | 697 |
Position | Tail |
Organism | Xenopus laevis (African clawed frog) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Amphibia>
Batrachia> Anura> Pipoidea> Pipidae> Xenopodinae> Xenopus> Xenopus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.020 |
Instability index | 45.59 |
Isoelectric point | 7.74 |
Molecular weight | 77801.48 |
Publications | PubMed=27762356
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP11149
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 220.39| 66| 96| 249| 316| 1
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249- 316 (115.12/71.86) LPSLFMRCT.TD..PARKDKFPAVTHLKFLARDMSEQVLLCASNQCSSIAECWSLRKEGLPlnNIFQQLSP
345- 413 (105.27/60.33) LPKLPISLTnTDikVASETKFYPGLGLALAFHDGNVQIVHRLSLQPMAVLYGSSLRPSEEP..SLKRQRSP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 242.58| 56| 102| 414| 469| 4
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414- 469 (98.77/61.19) TPCIHFKA..LQ..MSWTS....LALVGLDTQGK.....LSILRVS........PSMGHSLDMSTSLRHLLFLLEYC
512- 572 (70.14/41.36) TRILAMKAslCK..LSQTT....VTRV.CDYHAK.....LFLISISctlksllrPHVLNTPDKSPGDR....LTEIC
596- 660 (73.68/43.81) MPTL..QS..LQqlIQWLGdfvlYLLVSLPNQGSsvrpgHSFLRDG........ASLGTLREMMVMIRIWGLLKPSC
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