<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11144
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDVAYICEWDKRPRTSHCPSIPLVCAWSCRNLIAFTTDQRNEEEKDITNLIHILDTEHPWDVYSINSGHQEVITSLEWDQSGSHLLSADADGRIKCWGMTDHLANSWQSLVGSEVDGDPIVALSWLHNGVKLALHVEKSGVSSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPNGQVLTATESLCRLRCRVALADIAFTGGGNIVVATCDGSSTSPVQFYKVCVSVVSEKCKIDTEILPSLFMRCTTDPARKDKFPAVTHLKFLARDMSEQVLLCASNQCSSIAECWSLRKEGLPLNNIFQQLSPAVSDKQPMILKWRILSATNELERVSAVALPKLPISLTNTDIKVASETKFYPGLGLALAFHDGNVQIVHRLSLQPMAVLYGSSLRPSEEPSLKRQRSPTPCIHFKALQMSWTSLALVGLDTQGKLSILRVSPSMGHSLDMSTSLRHLLFLLEYCMVTGYDWWDILLHVQPGMVHNLVDKLNEEYTRQNAALQQVLSTRILAMKASLCKLSQNTVTRVCDYHAKLFLISISCTLKSLLRPHVLNTPDKSPGDRLTEICSKFTDTDIDKVMINLKTEEFVLDMPTLQSLQQLIQWLGDFVLYLLASLPNQGLSVRPGHSFLRDGASLGTLREMMVMIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTRLWLCCRDESHPCDPDESLIDECCLLPSQLLIPNMDWLPLGNGIISRLQSKLPLRLQFGKTPGAHSYASVHYEAYTRSPTQPKIDHLRRLHLGTFPTEPCKSCTRCGCVTMLKSPNKATAVKQWEQRWIKTCLCGGLWRKMPHTYS |
Length | 828 |
Position | Tail |
Organism | Xenopus laevis (African clawed frog) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Amphibia>
Batrachia> Anura> Pipoidea> Pipidae> Xenopodinae> Xenopus> Xenopus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.051 |
Instability index | 48.75 |
Isoelectric point | 8.19 |
Molecular weight | 92539.40 |
Publications | PubMed=27762356
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP11144
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 342.00| 112| 347| 298| 424| 1
---------------------------------------------------------------------------
298- 423 (167.54/143.47) WSLRKEG.LPlnnIFqqlsPAVSDKQ.PMILKWRILSATNELERvsAVALPKLP.ISLTNTDIKVASETkFYPGLGLaLAFHDGnvqIVHRL.SLQPMAVLYGSSLRPSEEPSLKRQ...RSPT.PCI.HFKALQ
653- 773 (174.46/110.77) WGLLKPScLP...VY....TATSDTQdSMSLLFRLLTRLWLCCR..DESHPCDPdESLIDECCLLPSQL.LIPNMDW.LPLGNG...IISRLqSKLPLRLQFGKTPGAHSYASVHYEaytRSPTqPKIdHLRRLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 83.34| 24| 69| 8| 34| 2
---------------------------------------------------------------------------
8- 34 (41.41/31.71) EWDKRPrtSHCPSIP....LVCaWSCRNLIA
77- 104 (41.93/22.13) EWDQSG..SHLLSADadgrIKC.WGMTDHLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 113.98| 33| 188| 428| 460| 3
---------------------------------------------------------------------------
428- 460 (55.36/34.55) SLALVGLDTQGKLSILRVSPSMGHSLDMSTSLR
619- 651 (58.62/37.02) SLPNQGLSVRPGHSFLRDGASLGTLREMMVMIR
---------------------------------------------------------------------------
|