<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11140

Description Uncharacterized protein
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQAASTVTAPSAAPTAPAPPSQSSTPKNGAATVNGEENGAHAINNHAEAMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLIENSNSNSTQLVLRHCIREGGQDVPSNKDVTSLDWNTDGTLLATGSYDGFARIWTQDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMHLASCSDDMTLKIWSMKEDLCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVYSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDVRK
Length520
PositionTail
OrganismXenopus laevis (African clawed frog)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Amphibia> Batrachia> Anura> Pipoidea> Pipidae> Xenopodinae> Xenopus> Xenopus.
Aromaticity0.08
Grand average of hydropathy-0.288
Instability index41.87
Isoelectric point5.29
Molecular weight56384.22
Publications
PubMed=27762356

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11140
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     369.71|      40|      40|     328|     367|       1
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  165-  200 (36.25/17.73)	..........PNKatVLRGHESEVFI.............CAWNPVS.........dlL.ASGS.GDSTAR
  219-  256 (42.85/22.28)	HCirEGGQDVP....S....NKDVTS.............LDWNTDG.........tlL.ATGS.YDGFAR
  257-  286 (32.65/15.25)	I...WTQDGNLAS..TLGQHKGPIFA.............LKWNKKG..........nY............
  287-  338 (40.11/20.39)	IL..SAGVDKTTI..IWDAHTGE..AkqqfpfhsapaldVDWQ..........nnttF.ASCS.TDMCIH
  339-  380 (64.34/37.08)	VC..RLGCDRPVK..TFQGHTNEVNA.............IKWDPSG.........mhL.ASCS.DDMTLK
  381-  431 (57.83/32.60)	IW..SMKEDLCVH..DLQAHSKEIYT.............IKWSPTGpgtsnpnsnimL.ASAS.FDSTVR
  435-  473 (50.13/27.29)	VE..RGVC...IH..TLTKHQEPVYS.............VAFSPDG..........kYlASGS.FDKCVH
  474-  515 (45.57/24.15)	IW..NTQSGSLVY..SYRG.TGGIFE.............VCWNARG........dkvG.ASASdGSVCV.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11140 with Med16 domain of Kingdom Metazoa
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