<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11117

Description Uncharacterized protein
SequenceMAAMSVSIYTLPAMESQLQSIFEEMVKTEIIEEAFAGMFMDTPEDERTKLISCLGAFRQYWSVLPQESHEQCVQWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRMVCEALINSDSLEWERTQLWILTFKLIRKIIGGVDYKGVRDLLKVILEKIQTVPDTVSSAVVQQLLAAREVVAYILERNACLLPAYLAVTEVLKLYPEGKLPHWLLGDLVSDFVDSFRPTARIGSICGRCSLLPVVNNSGAICNSWKLDPLTLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQHKQRCPVLEDQLVDLVVYAMERSETEEKYDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPVPDITKPQSTHSFAMTCIWIHLNRKAQNDNSKLQIPIPHSLKLHHEFLQQSLRNKSLQMTDYKIALLCNAYSTNSECFTLPMGVLVETIYGNGNVNIPLPGSNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKMAQAKSTFALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHSLAGVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTIARATHVTDFFTGSESIQGTWCKDILQTIISFTPHNWALHTLSCFPAPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSLQGSPPLFLCLLWKMLLETDQINQIGYRVLERIGARALVAHVRTFADFLVYEFSTSAGGQQLNKCIEMLNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFGNVCLRFLPVFDIVIHRFLELIPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMQLRDRTNLKRKLVHAIIGSLKDNRPQGWCLSDTYLKFGMNPRDDNPWIPDDTYYCKLIGRLVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVPGKDVGNALLNVVLKSQPLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVNILNSPSLTSETEWVGYPFQLFDFTACHKAYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLPEVLIPIVKTEYQLLYVYHLIGPFLQRFQQERTRCMIEIGVAFYEMLLNVDQCSTHLSFMDPVCDFLYHMKYMFTGDSIKDQVEKIICNLRPALKLRLRHITHISTESAAPPPPPMNSGSPAPQPNQVPVSVPLTVTQ
Length1382
PositionTail
OrganismXenopus laevis (African clawed frog)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Amphibia> Batrachia> Anura> Pipoidea> Pipidae> Xenopodinae> Xenopus> Xenopus.
Aromaticity0.10
Grand average of hydropathy-0.008
Instability index45.55
Isoelectric point6.77
Molecular weight157906.96
Publications
PubMed=27762356

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11117
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.86|      26|     127|     572|     617|       1
---------------------------------------------------------------------------
  591-  617 (44.58/46.25)	SLGIKG.FISQLLPTV..FKSHAWGiLHTL
  717-  745 (43.28/13.38)	SESIQGtWCKDILQTIisFTPHNWA.LHTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.87|      15|      15|    1008|    1022|       2
---------------------------------------------------------------------------
 1008- 1022 (28.12/18.81)	YKFHDRPVTYLYNTL
 1025- 1039 (25.75/16.59)	YEMQLRDRTNLKRKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.14|      61|     710|     458|     523|       3
---------------------------------------------------------------------------
  458-  523 (102.52/88.54)	IPIPHSLKLHHEF.LQQSLRNKSLQMTDYKiallCN.AYSTNSECFTLPmGVLVETIYGNGNVN....IP..LP
  538-  580 (56.21/36.60)	MNLLDSLTVHAKMsLIHSIATRVIKMAQAK.............STFALA.PALVET.Y................
 1209- 1245 (28.41/13.02)	..................................CHkAYSEMSCSYTLA...LAHAVWHHSSIGqlslIPkfLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.16|      56|     523|     254|     328|       4
---------------------------------------------------------------------------
  254-  328 (71.15/85.06)	WK....LDPLTLRFPLKGLLPydkdLFepQTALLRYVLEQpysrDMVcNMLGLNkqhkqrcpVLED...........QLVDLVVYAMERS
  780-  850 (88.01/50.60)	WKsmtnENDIITHFSLQGSPP....LF..LCLLWKMLLET....DQI.NQIGYR........VLERigaralvahvrTFADFLVYEFSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.46|      34|     710|     202|     243|       5
---------------------------------------------------------------------------
  202-  237 (57.24/43.36)	KLYPEgKLPHWLLGDLVSDFVD...SFRPtARIGSICGR
  939-  975 (58.23/27.74)	KKYPE.KLYFEGLAEQVNPPVQiqpQYLP.IYFGNVCLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      16|     715|      52|      69|       6
---------------------------------------------------------------------------
   52-   69 (26.81/29.18)	SCLGA.....FRQywSVLPQESH
  746-  766 (26.81/17.95)	SCFPAplqafFKQ..NNVPQESR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.15|      56|     265|    1045|    1121|       9
---------------------------------------------------------------------------
 1046- 1121 (92.25/83.94)	SLKDNRPQGWClsdtylkfgmNPRddnPWIpddtyycKLIGRLVDTMAGKS..PGPFPNCDWRFNEFPN..PAAHALHVT
 1322- 1381 (93.90/44.93)	SIKDQVEKIIC..........NLR...PAL.......KLRLRHITHISTESaaPPPPPMNSGSPAPQPNqvPVSVPLTVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.41|      20|     783|      95|     116|      11
---------------------------------------------------------------------------
   95-  116 (32.96/26.27)	CLAMAVETGllPPRMVCEALIN
  881-  900 (38.44/24.32)	CLAMRSHEG..NEAQVCYFIIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.01|      17|     257|     990|    1006|      13
---------------------------------------------------------------------------
  990- 1006 (30.31/16.50)	LIPVSKSLETLL..DHLGG
 1248- 1266 (26.69/13.72)	LIPIVKTEYQLLyvYHLIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11117 with Med23 domain of Kingdom Metazoa
Unable to open file!