<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11111

Description Uncharacterized protein
SequenceMDAATPGNGGIISDVVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCAPESYVQCHAPTSSAYEFVQWLDSIKFMGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQTHKVCILICNSPPYLLPAVESTTYSGYTTENLVQKIGERGIHFSIISPRKLPALRTLFEKAMPVGMIEQQPKDYSQDPRHMILVRGMVLPVGGATSVPGVIPLKQPISQPPLPVIPPQIANAPPHQLPPVQPPYMQVPPQNTLTPAHAAAQSAVEAAKNQKTNLPNRFPLPNLNQMPTAPAIGSPFNQPPAPTMPPIASVPKMVASTASLMTPASQSSLVTTVTTGPGPAPVQLQQQGAPQQSVPPPMPIAGAAGGVQAPQPSQPQMGTAQLPCTQTPVNGNKLLAWSGVLEWQEKPRSVSVDNNAKLTRSLPCQVYVNPGENLKTDQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIMGSGFAGCVHFPHTTPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQMQKIDQQRNMGAGQAVGAGSVPANSQAFLQKQPGNLPVAQAVPQQMQVQQVGPGMPSINQVTMMDEQQRAQNMLHIRVQQPQQTASQAPPQATQTSVQAPGQPQNPQAGAMLRPQNPGANPQLRNLLLSQQPPQTSVPQTQQPLHHMQQAAQGMLPHQAMGQQMQHQAPGQQQLQLSGQTLMHQAPAQQWGNQMQQRAPIPGTLMMNTGPRGPVPQPGLQQVQAQSVMEDDILMDLI
Length804
PositionUnknown
OrganismXenopus laevis (African clawed frog)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Amphibia> Batrachia> Anura> Pipoidea> Pipidae> Xenopodinae> Xenopus> Xenopus.
Aromaticity0.05
Grand average of hydropathy-0.332
Instability index55.04
Isoelectric point8.81
Molecular weight86905.84
Publications
PubMed=27762356

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11111
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     415.11|      60|      67|     229|     288|       1
---------------------------------------------------------------------------
  168-  231 (40.05/ 7.74)	.........Q............KigergihfsiI..SPRKLPALrtlfekamPV..G.MIE.....................QQ............PK.D........Y..SQDPRHMIL.V....RGMVL.PVGGA.......T...SV
  232-  298 (105.41/34.02)	PGVIP.LK.Q............P..........I..SQPPLPVI........PP..Q.IAN.....................AP............PH.QLP.PVQPPY..MQVPPQNTL.T....PAHAA.AQSAVeaaknqkT...NL
  299-  360 (50.27/11.85)	PNRFP.LP.NlnqmptapaigsP..........F..NQPPAPTM........PP....IAS.....................V........................PK..M.VASTASLmT....P..AS.QSSLV....ttvT...TG
  361-  421 (55.50/13.96)	PGPAP.VQlQ............Q..........Q..GAPQQSVP........PP..MpIAG.....................AA............GGvQAPqPSQPQMgtAQLP..CTQ.T....P.........V..ngnklL...AW
  600-  683 (55.26/13.86)	PGNLP.VA.Q..........avP..........Q...QMQVQQV........GP..G.MPSinqvtmmdeqqraqnmlhirvQQ............PQ.Q.......TA..SQAPPQATQ.TsvqaPGQPQnPQAGA.......MlrpQN
  684-  748 (61.55/16.39)	PGANPqLR.N............L..........LlsQQPPQTSV........PQ.....TQ.....................QPlhhmqqaaqgmlPH.QAM.GQQMQH...QAPGQQQL............QLSGQ.......T....L
  749-  792 (47.05/10.56)	MHQAP.AQ.Q............W..........G..NQMQQRAP........IPgtL.MMN.....................TG............PR.G.P.VPQPGL..QQVQAQ.................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.35|      18|      23|     477|     494|       2
---------------------------------------------------------------------------
  477-  494 (33.91/19.40)	LTTLGPLFR..NSRMVQ.FHF
  499-  519 (23.44/11.44)	LESLKGLYRimGSGFAGcVHF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11111 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPVIPPQIANAPPHQLPPVQPPYMQVPPQNTLTPAHAAAQSAVEAAKNQKTNLPNRFPLPNLNQMPTAPAIGSPFNQPPAPTMPPIASVPKMVASTASLMTPASQSSLVTTVTTGPGPAPVQLQQQGAPQQSVPPPMPIAGAAGGVQAPQPSQPQMGTAQLPCT
2) VAQAVPQQMQVQQVGPGMPSINQVTMMDEQQRAQNMLHIRVQQPQQTASQAPPQATQTSVQAPGQPQNPQAGAMLRPQNPGANPQLRNLLLSQQPPQTSVPQTQQPLHHMQQAAQGMLPHQAMGQQMQHQAPGQQQLQLSGQTLMHQAPAQQWGNQMQQRAPIPGTLMMNTGPRGPVPQPGLQQVQAQSV
246
605
409
794










Molecular Recognition Features






MoRF SequenceStartStop




NANANA