<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11108

Description Uncharacterized protein
SequenceMDAATPGNGIISDVVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCAPESYVQCHAPTSSAYEFVQWLDSIKFMGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQTHKVCILICNSPPYLLPAVESTTYSGYTTENLVQKIGERGIHFSIISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGMVLPVGGATSVPGVMPPKQHISQPPLPVVPPQIASAPSHQLPPVQPPYMQVPQQSTLTPAHAAAHSAVEAAKNQKNSPSNRFLLPNLNPMPNAPAVGTPFNQPPAPTLPPNASVPKMVPSPSSLMTPASQSSLITTVTTGPGPAPVQLQQQGAPQQPVPPSMPITGAVGGVQAPQPSQPQIGTVQLPCTQTPVNGNKLLAWSGVLEWQEKPRSVSVDNNAKLTRSLPCQVYINPGENLKTDQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIMGSGFAGCVHFPHTTPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQMQKIDQQRNMGAVQGVGAGSVPANSQGFLQKQPGTLPVGQAVSQQMQGQQVAPGMPSISQVAMMDEQQRSQNLLHIRVQQPQQLASQAPPQATQSSVQAPGQPQNPQPGAMLRPQNPGANPQLRNLLLSQQPPQSSVPQTQQPLHHMQQAAQSMLPHQAMGQQMQHQAPGQLQLPGQSLMHQTPAQQWGNQMQQRAPIPGTLMMSAGPRGPVPQSGLQQVQAQSVMEDDILMDLI
Length801
PositionUnknown
OrganismXenopus laevis (African clawed frog)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Amphibia> Batrachia> Anura> Pipoidea> Pipidae> Xenopodinae> Xenopus> Xenopus.
Aromaticity0.05
Grand average of hydropathy-0.327
Instability index62.22
Isoelectric point8.81
Molecular weight86511.26
Publications
PubMed=27762356

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11108
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     879.46|     161|     272|     313|     476|       1
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   37-  135 (81.83/21.53)	.................................................LPAIEYFNGGPPAETDfggdyggtQYS.....LVVFNTVD.caP.....ESY.V.Q.C...............................H.......AP.T......SSAYEFVQWL.DSI..kfMGGGGEScSLIA...EGLSTA..LQL..........................FDDFK.KMREQIGQTH
  140-  272 (152.56/46.91)	LICNSPP....YLLpavestTYSGYTTENlvQ.KIGERGIHFSIISPRKLP.........ALRT..............LFEKAMPVGLI...EP..QPKDY.S.Q.D...............................PrhmilvrGM.VLPvgGATSVPGVMP.P.KQH....I...SQ.....P.....PLPVvPPQIA......SAPSHQLPP..........VQPPY.MQVPQ.....
  273-  404 (213.21/72.68)	.QSTLTPAHAAAHS......A..................................VEAAKNQKNS........PSNRFLLPNLNPMPNA...PA..VGTPF.N.Q.P...............................P.......AP.TLP..PNASVPKMVPSP.SSL....MTPASQS.SLITTVTTGPGPA.PVQLQ....QQGAPQQPVPPSMpitGAVGGVQAPQ.PSQPQIGTVQ
  405-  596 (217.01/70.04)	LPCTQTPVNGNKLL......AWSGVLEWQ..E.KPRSVSVDNNAKLTRSLPCQVYINPGENLKTD........QWPQKLIMQLIPQQLL...TT..LGPLFrN.S.RmvqfhftnkdleslkglyrimgsgfagcvhfP........H.TTP..CEVRVLMLLYSS.KKKifmgLIPNDQS.GFVNGIRQVI.TN.HKQVQ....MQKIDQQ...RNM...GAVQGVGAGSvPANSQ.GFLQ
  598-  705 (139.13/42.09)	QPGT.LPV.GQ.........AVSQQMQGQ..QvAPGMPSISQVAMMDEQQRSQNLL....HIRVQ........Q.PQQLASQAPPQATQssvQA..PGQPQ.NpQ.P...............................G.......AM.LRP..QN...................................PGAN.P.QLRnlllSQ....................QPPQ.SSVPQ.....
  706-  790 (75.71/18.91)	...TQQPLH.................HMQ..Q.AAQSM...........LPHQAM...GQQMQ.H........QAPGQL..QLPGQSLMhqtPAqqWGNQM.Q.QrA...............................P.......IPgTLM..MSAG.PRG.PVPqSGL....QQVQAQS.............................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11108 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PANSQGFLQKQPGTLPVGQAVSQQMQGQQVAPGMPSISQVAMMDEQQRSQNLLHIRVQQPQQLASQAPPQATQSSVQAPGQPQNPQPGAMLRPQNPGANPQLRNLLLSQQPPQSSVPQTQQPLHHMQQAAQSMLPHQAMGQQMQHQAPGQLQLPGQSLMHQTPAQQWGNQMQQRAPIPGTLMMSAGPRGPVPQSGLQQVQAQS
2) PGVMPPKQHISQPPLPVVPPQIASAPSHQLPPVQPPYMQVPQQSTLTPAHAAAHSAVEAAKNQKNSPSNRFLLPNLNPMPNAPAVGTPFNQPPAPTLPPNASVPKMVPSPSSLMTPASQSSLITTVTTGPGPAPVQLQQQGAPQQPVPPSMPITGAVGGVQAPQPSQPQIGTVQLPCT
588
231
790
408










Molecular Recognition Features






MoRF SequenceStartStop




NANANA