<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11088
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSTISSWQTFLTNSLATRLPPETFESYVQILNSRHPLSPNRICDIFLHPREGNDYSLDTRATKYIQILLSLKLVNIPAILKTLLKVSSFSKHSEEQIGHNESVKDTQDGNGQKENGPARWWRNSYGAEETLFYRLAKIISSGSAPSKIEEAAELVKACIQWMEVVIAASHAAQEMMGLDQTHTQEKNAQNMALGTLVIAVVENAQVMHALSKGSVPKATRKELSKTLANFVPLLLQNSAQAAARLEVFRTETLVAIEPVDKKEMAADKAIEDILDESIGLAHGVDSMVVEEVPIMNSRAGLYIYLNSLVRITDIPLMPGASADSVQLVARPLIDDNAIFAYLHNRYQGDIETTIIDFILAAFDVLANATFRNEKPQAITILRSFLINKVPVMLTTLCAQLFPPLTSEYCITQALGRVDTTAFPTLSNMFDESSSANNMFSDSVRQDFCFACCLHGLIQESSIEELLGDIPMQSLPAGGRYIKDDLVQQCLSDPERAEVLIGELENMDGNVGAVSQAITEVIGRLCSNKETMSLKTLCSQLSRKPSSLDVILLFEKPVIILQPICELLDNWRYDEDQGEYQPVYEEFGSVLLLALSFTHRYGLSTVDLGIRNADGFLAKFLRQGHLARATEDLTEQENSHLDGWIRGLFDSGGLGDELMSSCPPHDFYMLVPTLFSTIVTACHCKYLSEKALKDGLEYLVDTFLLPSLIPGITWLASHLWESRGDSNACLQILSALITNPASISNNTEASQMLNAILNIVAKNLEIKLRYVQRFEPSRQDVEPLSKALRGNLGWERRGASDHNELEAWTATPGGGLTVAIKHTIASLVQWALNPTANTHPASYTHRQFLACEKIHDAKRLVHTILEEIKTQTEAGNASIVYDVACAIVCSPDSASWDAGIQVDVLGTNTFQPLQRRLNLREALKNEAENAPKLHKTDPFTADTIVRLYRKVEAQLVMPQQTMLEHDALGGLDSGLHQALDSAVLEGAMADAGMGMDGLDDNQHGLGGMNDPHGDLMHGLMGGGDAGDLLDGFGTGNFNSTDDGMGF |
Length | 1045 |
Position | Tail |
Organism | Phialocephala subalpina |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Helotiales> Mollisiaceae> Phialocephala>
Phialocephala fortinii species complex.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.104 |
Instability index | 43.23 |
Isoelectric point | 4.95 |
Molecular weight | 114803.27 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP11088
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 105.97| 36| 480| 135| 182| 1
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135- 172 (54.09/55.88) LAKI...ISSGSAPSKIEEaaELVKACIQWMEVVIAASHAA
203- 241 (51.88/26.74) NAQVmhaLSKGSVPKATRK..ELSKTLANFVPLLLQNSAQA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 128.49| 48| 280| 325| 425| 2
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327- 349 (27.87/40.16) .....................................LVARPLIDDNAIFAYLHN.RYQGD
376- 400 (30.83/40.66) QAIT.ILRSFLINKVPVMLTTLCAQL...................................
515- 575 (69.79/31.55) QAITeVIGRLCSNKETMSLKTLCSQLsrkpssldvilLFEKPVIILQPICELLDNwRYDED
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 93.84| 29| 35| 963| 997| 6
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963- 997 (39.99/37.26) EHdALGGLDSGlHQALdsavLEGAM..ADAGMGMDGL
1001- 1031 (53.84/29.85) QH.GLGGMNDP.HGDL....MHGLMggGDAGDLLDGF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.25| 17| 20| 279| 295| 8
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279- 295 (30.39/24.15) GLAHGVDSMV.VEEVPIM
300- 317 (25.86/19.30) GLYIYLNSLVrITDIPLM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 83.84| 23| 639| 11| 33| 9
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11- 33 (39.51/25.29) LTNSLATRLPPETFESYVQILNS
653- 675 (44.33/29.31) LGDELMSSCPPHDFYMLVPTLFS
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