<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11069
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPAANEYPQDSVLPQSHYSWGTQNAISWSKHGFVTYAMPPATSGFNLYMTYLENVDGKDWQLARPQGLTIKPLEDSGVPELSMVQWSNLLTDLAVFDEQGNFYILLAGVGLLSSKGKGNGSLNGNGTSIGASNGHNNGSSNGNGHISGNSNGTAVNGSQNGASKPNPDDLEGPSYELTSYNHTEMIFRDISPTNGPPHSRCVAFKWLGIEKPQIINKAAELALDGRNYSYGVHQHQIPKLAHPIATKQACVALRQNGIFNLYYQGEHKVEYHKLSANLAADGSEGYIYFSHASIGFSADRKIIVVAYEAGSKMVYTYSISVDWGFLVDSAVKQKTDPHYHTPKEGQKLPRMTAQLLHQMAPVPNATGELSAQLMKPSIEVSRLKLIDVVSPYYNVGSDLEILLSYDVISGNAYSSTIFRYHLKDCADSMEDVFANIAGDDPVEKGKVYSLVIQDKMTVGKRLQQINTFVADSLILIIYEDGTIDAVDRSTWAVMGATETPVKDEDMDIKGLSYPQQLKTILDCGFRFPRFREDSAVSGPLMVSISPNMTCMAVQRFGGDTSLELKVMNHPHEAHDTHLTAIGVAYSHAHACYANTSSDDIIVLIREELERLSDPTLSNKLVEQLIIESHRAINFQLNSFSKESVDKLLSNPPMQKLLSLQLAVSEHHTLNRAIRDLAWVVLNLRSTSFGIMFSLSSIYRQISKKKPVEDSLEDSISRAECIILLVGNVKWLIDLIVYLNQELLQLALTRSRPEGSLINIHNSVALPIIMSKVPRLFLMYALSSIGKTHEILKKLQKDLSESNKLFTPMKEALNRFFGACNSLPLNLSIFESFLREVEILVSKEVATRAQLDSSIPLKLEQHLFCLGVIPDGIRNIANMTIERHAASINRDMKLSELYFYDSSWIDVGIATREFPKDERVKEVFKPTQIRLQYSPHESVDALRKVIISASSPITSGGVSVMGRGYDSSNKVRKCTRCRSVSLVADPLVFDAPSTIGLWTMVFQRTCICGSTWVNCS |
Length | 1015 |
Position | Tail |
Organism | [Candida] intermedia |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Metschnikowiaceae> Clavispora> Clavispora/Candida clade.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.165 |
Instability index | 37.16 |
Isoelectric point | 6.27 |
Molecular weight | 112409.90 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP11069
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.50| 22| 32| 108| 136| 2
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108- 132 (31.58/32.77) GVGLLSskGKGNGSlNGNGTSIGAS
142- 163 (41.92/19.58) GNGHIS..GNSNGT.AVNGSQNGAS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 128.22| 46| 51| 615| 664| 3
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615- 664 (61.95/59.63) TLsNKLVEQL..IIESHRAINFQLnSFSKESVDKLLS.NPPMQKllSLQLAVS
668- 716 (66.27/46.55) TL.NRAIRDLawVVLNLRSTSFGI.MFSLSSIYRQISkKKPVED..SLEDSIS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 46.11| 13| 32| 286| 298| 4
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286- 298 (25.20/15.37) YIYFSHASIGF...SA
315- 330 (20.91/11.48) YTYSISVDWGFlvdSA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.77| 25| 32| 343| 369| 6
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343- 369 (38.76/32.31) KEGQKLPRMtaQLLHQMAPVPNATGEL
375- 399 (41.01/27.42) KPSIEVSRL..KLIDVVSPYYNVGSDL
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