<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11063
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSPTISLHKLVKVLASKKTSPKVFGSLLKQLLSTTEVSDNEMVESLIEIPKGSDPVQQKYLVDYAVEFACGSISDLQRFMSLLVQASVESQRTYVVFFKNSYSRVFRLNALKEFIQSGYIPYTVRFMSNLAEVVELDSIQKSTLTHILFLWGDIIDNHSEMIPSGPFKEMAISVMSNLVKFGYDSLSGYFTKKANVLMTTADLNKELQPGVPLVPLGAENNEKLTMSMVQKSFSVNWHSKKAATYLIIKKFMWLNTQFEQWQIHNLVDDYLQFFGISTHKLSELVDEIVSAFFGGITIAILLKEMPYVIFNWRNFIVSTLPIFLKNSRHIHSAISSENLGELLCDAVVKRKDTAITQMAVGDKPYDLRKHFLRNCIYQKIITLEEFTKLFPEEADALSLSLIIHETEQLSHLDSLTSELNNKLLEVNTEFTSLEESRLIEYFQSLPKTNILFLEKKQKQLNKLAHKAVDALVKDKSSEKLGRLLIAMANTPTVSNIIFFQDPLGPWGLLNKLILYLDQESFRVDEDDSNFQDTYAYFGVILSGIIAIVVHFNIDFKLAEVKDSYTINFITRFFYRHCEDLTAKVVGSDEDDSTIVANYNTLLQDWVNALFDVNNEGLSDDLIKSINVKQTYKLITIIFQQAITANILGTLSTSGLNNGLDYLSQNFLAPCSLEIMEWILSGIGPLQPNSEAMVSIFLRIMEINLGNSGTTSDPNYTFRVLLCIVGPRALEKLQTLKNWRNFEAAARSVSILKRELGHDHLTPQNANILQVGSFDLVQTIKQCLIHYVREPGNYSVLTTWANIRWWWSKLSGPQTFDAFLQELHQCLVLHNHVDVEESKVFLDFLVFLVVATSGVKEESSSTGTGNEIDMGHRESATVSDKFSLTIDNHYSSIFNEVAGFVPESEKPPKDNLMGDFEMDDLFNDAGDDLFGDNGLHASAPFTKKQHSLPAVDTVYKTLKGADGKYTCIEQMLIGRGGGGKNRITGIAKLKLAQELEHAHRR |
Length | 1000 |
Position | Tail |
Organism | [Candida] intermedia |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Metschnikowiaceae> Clavispora> Clavispora/Candida clade.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.068 |
Instability index | 39.51 |
Isoelectric point | 5.60 |
Molecular weight | 112878.02 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP11063
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 130.53| 43| 55| 64| 117| 1
---------------------------------------------------------------------------
64- 99 (24.21/37.60) ......................YAVefacgsisdlqRF.MSLLVQA....SVE.SQRTYVVFFK
100- 151 (58.48/41.65) NSYSRVFRLNALKEFIQSgyipYTV...........RF.MSNLAEVveldSIQkSTLTHILFLW
156- 189 (47.84/32.55) DNHSEMIPSGPFKEMAIS....................vMSNLVKF....GYD.SLSGY.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.87| 21| 56| 276| 307| 2
---------------------------------------------------------------------------
286- 307 (31.40/23.64) DEIVSAFFGGITiAILLKEMPY
345- 365 (35.48/13.65) DAVVKRKDTAIT.QMAVGDKPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 112.27| 46| 57| 407| 455| 3
---------------------------------------------------------------------------
390- 451 (58.87/44.88) FPEEadalslsliihetEQLSH..LDSL....TSELNNKLLEVNTEFTSLeeSRLIeYFQ......SLPKTNIL
452- 514 (53.39/30.95) FLEK........kqkqlNKLAHkaVDALvkdkSSEKLGRLLIAMANTPTV..SNII.FFQdplgpwGLLNKLIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 119.21| 36| 56| 637| 673| 5
---------------------------------------------------------------------------
637- 673 (56.64/45.54) IFQQAITANILGTLSTSGLNNGLDYLsQNFLAPCSLE
695- 730 (62.57/45.45) IFLRIMEINLGNSGTTSDPNYTFRVL.LCIVGPRALE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.77| 32| 251| 552| 602| 8
---------------------------------------------------------------------------
524- 570 (39.94/71.13) DEDDSNFqdtYAYFGVILsgiiaivvhfNID......FKLAEVKDSYtiNFIT
588- 635 (40.83/20.30) DEDDSTI...VANYNTLLqdwvnalfdvNNEglsddlIKSINVKQTY..KLIT
---------------------------------------------------------------------------
|