<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11038
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MEGINIAGSSSAQWKTLLRRCLSQRTDASEFRAFAKLMLNRHSIPSRRLIDIILASRSVTNVPWDPLIPLYVDTLHRLGSIKLEDILKSLLAHSTVSQKQVAAQNGSTVKPPVSTLMTDYCIIHNATIAATSGHAPKTTPDAANTFSALAKWILALLSWNSSRETVGDPAGSLTNSPDTLAVFESLGILFAALMSTEKAVNALSASRSKGWSNELGRALSEYIPLCGGVSIPLRDRLETLRKDFNLYGHDGEKSLEDAMMENFNISALEFESNVLDGSIVNSRAGPYIYVNALLFGRPLVDDSMVVNYLHNRYGGDRMTLIEDLITAAFDVLSNGMYRNEPNRTMFIFRSFLVNKLPPFFADMCASAINPIPMELCITRALSRIDPNAFPSFSEMFAMQGNSILSDVRQEFLFACALHKLIPEASIERLLGENPMQTLPVGGQLRREDLVSQINNNPERTEQLINELESMEGNAGTIAAAITEVMHSLCSRKETMTLKNICNSLSRRPLSLDVMLLFISPSTILQPLCALLDAWKWGEEQGESQPVYDEFGSILLLVLAFKHKYGLSHYDLGISNPDSFVLRLLQHGCSSQRLEDLDEKQKNNLGAWITALFIAEGISDESMASCSPQEFYFLVSTLFSQSLAACETGKLEFETLKGGFELMALIWLGHHIWESESDLTTSLKLLLALIKPSSISGEAQEIHRTVLLITAKQLGDQLKGVCTRHPSGNDVKPILEALEPYHSFQRRSTARYGEVEGWAANPAGGGIVANIRHTFSSFVFWSTSPEISMTPPSYTHRQIVAGIRLVGAVRVLRGIIDELKLQAETGSGDLALDIAATLICAPLAESFAAERAAFHPVDPSKDAIPRCPILTLRDALSLERESIPKLIDSDTLRAELIVRLNRRVDALTAVPQMPQEVSNIDVGNIMQDINLEGEGMGMSGQRHDEGGEQSGQPNHGEDDTGDLNEMLDAAVAAAAEGDGSGDGRGMGMSGMGGVGMGMGSGIDTSIDDVLNGADMGMENPEYLDLDMEGMF |
Length | 1030 |
Position | Tail |
Organism | Blastomyces percursus |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Onygenales> Ajellomycetaceae> Blastomyces.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.066 |
Instability index | 43.54 |
Isoelectric point | 4.96 |
Molecular weight | 112477.95 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP11038
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 132.09| 33| 34| 380| 412| 1
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338- 376 (34.30/19.58) ...RNEPNrtmfIFRSFlvnklPPFFA...DMCASAINPIPMELC
380- 412 (57.17/38.10) ALSRIDPN....AFPSF.....SEMFA...MQGNSILSDVRQEFL
416- 449 (40.61/24.69) ALHKLIPE....A..SI.....ERLLGenpMQTLPVGGQLRREDL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 442.57| 148| 340| 143| 299| 2
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143- 299 (225.23/169.50) ANTFSALAKWILALLSWNSSRETVGDPAGSLTNSP...DTLAVFESLGILFAALMSTekaVNALSASRSKGWS....NELGR......ALSEYIPLC...gGVSIPlrDRLeTLRkdFNLYG..HDGEKSLEDAMMENFN..ISALEFESNVLDGSIVNSRAGPYIYVNALLFGRPL
474- 642 (217.34/137.91) AGTIAAAITEVMHSLCSRKETMTLKNICNSLSRRPlslDVMLLFISPSTILQPLCAL...LDAWKWGEEQGESqpvyDEFGSilllvlAFKHKYGLShydlGISNP..DSF.VLR..LLQHGcsSQRLEDLDEKQKNNLGawITALFIAEGISDESMASCSPQEFYFLVSTLFSQSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.65| 16| 48| 931| 950| 3
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931- 950 (27.85/23.53) EGEGMGMSGQrhdeGGEQSG
981- 996 (34.81/18.61) DGRGMGMSGM....GGVGMG
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