<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11026

Description Cmgc cdk cdk8 protein kinase
SequenceMLHGGYTSKKRVQERYKILGFISSGTYGRVFKAQSRVGQPGLFAIKKFKPDKEGEVQYTGISQSAIREMALCTELSHPNVVHTVEIILEDKCIFIVFEYAEHDLLQIVHHHTQNPRQPIPAKTIQSILWQLLKGLHYLHQNWVMHRDLKPANIMVTGKGAVKIGDLGLARLFYKPLGSLYNGDKVVVTIWYRAPELLLGSRHYTPAVDLWAVGCIFAELLALRPIFKGEEAKLDNKKQPPFQRNQMQKIVEILGMPRAEDWPLLRAMPEYSQLPTLAAGNPRINRPMGLRNWYDTCMRTNNYPDGLGNSPGPEGFSLLQGLLEYDPQKRLTAEKALKHPYFKVGLPDGQTPSDNCFAGSTIDYPRRAVKADDNDIRTGSLPGTKRSGLPDDSLLRPAKRHKEV
Length403
PositionKinase
OrganismDiplodia corticola
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetes incertae sedis> Botryosphaeriales> Botryosphaeriaceae> Diplodia.
Aromaticity0.09
Grand average of hydropathy-0.414
Instability index41.65
Isoelectric point9.42
Molecular weight45527.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11026
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.88|      11|      23|     254|     265|       1
---------------------------------------------------------------------------
  254-  265 (19.46/12.47)	GMPRAeDWPL.LR
  279-  290 (18.42/ 7.51)	GNPRI.NRPMgLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.51|      25|     120|      32|      60|       2
---------------------------------------------------------------------------
   32-   60 (31.04/34.03)	KAQSRVGQPGLfAIKKFKPdkEGEVqYTG
  158-  182 (43.47/27.01)	KGAVKIGDLGL.ARLFYKP..LGSL.YNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.70|      12|      24|     103|     114|       3
---------------------------------------------------------------------------
  103-  114 (22.48/14.51)	DLLQIVHHHTQN
  130-  141 (22.22/14.27)	QLLKGLHYLHQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.39|      38|      42|     307|     347|       4
---------------------------------------------------------------------------
  307-  347 (61.18/50.73)	GNSPGPEGFSllQGLLEYdPQKRLTAE....KALKHPYFK.VGLPD
  348-  390 (60.20/39.00)	GQTPSDNCFA..GSTIDY.PRRAVKADdndiRTGSLPGTKrSGLPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11026 with CDK8 domain of Kingdom Fungi
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