Description | Mediator of RNA polymerase II transcription subunit 19 |
Sequence | MSDVPQSSSSHTGPPPSPSSPAVDPAQSRQLHQQNRSKDQTPHTPTSPPLMSVSAQNYASSFSTTQTSPAQIPRPASLSSPPSSVAMSTQVSQQPTVTSTTSFPTPASSVGGHFANNHTMDEAEGVSKNATADAQKNGESSIGKESGLDFMDIDPSEHRRTDHDRQKRSPGGNLDENTMDLDYRTASSSQEEEMSLAALQKDIGTAFHLCKSSYTASGPNPNLDIVSLYGLGPVAASVARTDPVTGEKINRLRKSYEGKIKGLGLAGRNKPVKVEPGAPGGLRYLTLWPEEEWKNQKVYGKDIKVAEPDSSFFRQQLKAMKMEPGNLPNHEFWEDALGHEKPPKVIAAADVSMAKTAGTVPGSIRHPMHTNGTPPMVSTPTAENTRPKRTGKKRSYNDSSFVGYGEGFPDDEADLESGRYSNSEEGGRGPGKKKRKKDHISGVSPSLTERGGSYGVGMFGVGAR |
Length | 464 |
Position | Head |
Organism | Emergomyces pasteurianus Ep9510 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Ajellomycetaceae> Emergomyces. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.847 |
Instability index | 53.52 |
Isoelectric point | 7.82 |
Molecular weight | 49630.27 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364151 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP11005 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 131.68| 29| 30| 47| 76| 1 --------------------------------------------------------------------------- 20- 43 (38.16/17.34) SP......AVDPAQSRQLHQQNRSKDQTPH 47- 76 (47.98/27.36) SPPlMSVSAQNYASSFSTTQTSPAQIPRPA 80- 107 (45.54/22.04) SPP.SSVAMSTQVSQ.QPTVTSTTSFPTPA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 77.28| 24| 30| 128| 154| 2 --------------------------------------------------------------------------- 128- 154 (34.07/24.01) KNATADAQKngeSSIGKESGLDFMDID 159- 182 (43.21/22.77) RRTDHDRQK...RSPGGNLDENTMDLD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 80.53| 26| 30| 249| 276| 3 --------------------------------------------------------------------------- 249- 276 (38.94/26.81) INRLRKSYEGKIKGLGLAGrnKPVKV.EP 282- 308 (41.60/22.84) LRYLTLWPEEEWKNQKVYG..KDIKVaEP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 188.42| 50| 91| 309| 358| 4 --------------------------------------------------------------------------- 309- 358 (89.17/40.83) DSSF..FRQQL..KAMKMEPGNL..PNHEFWEDALGHEKPPK.V.IAAADVSMAKTAG 361- 391 (30.39/ 9.84) ...................PGSIrhPMHT.......NGTPPM.VsTPTAENTRPKRTG 398- 452 (68.86/30.12) DSSFvgYGEGFpdDEADLESGRY..SNSEEGGRGPGKKKRKKdH.ISGVSPSLTERGG --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GKKKRKKDHISGV 2) YLTLW | 431 284 | 443 288 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab