<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10995

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDSQLLTPLSTLETRLNNLLMSMVSSPTAAGAPAAALVLLEADDALSSALETLHTHQSNYAKILRLRAEALSLEERVRDIVREVENVGNEISTACQQGMDVSDDDSSDSESEIEAEGGSADLDTHMGGVSERSPRFDPKETGKGKRKLKNEIDYKLLVDFARRISRYNSDAAADVGAGSPLRATPPTGDAGGQPQQVGVKEENGKTVERVGTGRQPVAKGVGVAALSQETVSWLDETAKWSRDLSRMPFPSEDRIRMGLMGQLQTKASEGVDVEKEIERLIRVSEGEGAGTGAGPGGAQDSAGAGEHATAMDEVVGIRGEHIARGSIGRSDTAMGGVPVTGAKPKAVLDLDLYDPDEDD
Length359
PositionMiddle
OrganismEmergomyces pasteurianus Ep9510
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Ajellomycetaceae> Emergomyces.
Aromaticity0.03
Grand average of hydropathy-0.494
Instability index44.19
Isoelectric point4.67
Molecular weight37935.59
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10995
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.79|      15|      21|     193|     207|       1
---------------------------------------------------------------------------
  193-  207 (26.89/18.95)	QP..QQVGVKEENGKTV
  215-  231 (20.90/13.17)	QPvaKGVGVAALSQETV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.66|      69|     205|      69|     139|       2
---------------------------------------------------------------------------
   69-  139 (110.59/53.39)	EALSLEERVRDIVR..EVENVGNEISTACQQGMDVSDDDSSDSE......SEIEAEGGSADLDTHMGGVSERSPRfdPK
  269-  345 (106.07/46.57)	EGVDVEKEIERLIRvsEGEGAGTGAGPGGAQDSAGAGEHATAMDevvgirGEHIARGSIGRSDTAMGGVPVTGAK..PK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10995 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAADVGAGSPLRATPPTGDAGGQPQQVGVKEENGKTVERVGTGRQPVAKGVG
2) ISTACQQGMDVSDDDSSDSESEIEAEGGSADLDTHMGGVSERSPRFDPKETGKGK
3) KWSRDLSRMPFPSEDRIRMGLMGQLQTKASEGVDVEKEIERLIRVSEGEGAGTGAGPGGAQDSAGAGEHATAMDEVVGI
171
91
239
222
145
317










Molecular Recognition Features






MoRF SequenceStartStop




1) HATAMDEVVGIRGEHIARGS
2) IERLIRV
3) KRKLKNEIDYKLLVDFARRISRYN
4) TAMGGVPVTGAKPKAVLDLDLYDPDEDD
307
277
145
332
326
283
168
359