<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10986
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MAANGHTHGMSMDLGSAMDVDGLDLSVGHALNAMENQMPLDVDLFGDPLHVQQMPSASASKQLQQRLDELRSRGCCQGIAWSKQGTIAAISKGGRSIDLRFIRCHPDNGTWQLSQPTPWNFGAILPSCPIVHLAWAGQSSPELAVIDFVGRVSIWSFSITLNRPYPVRKWDQDSADDLQAVVGCYWLPLASPSRQQYHVMYGPAVRDGSTYKYENSIVPGFAPWHPNPGKSALLCVTTSGVLKLFFSQNNNKHEEATVELENVNSSEDRITHASLSSDRNALLVALATASKQLKVVRVQIQWGQQQTGDKQVPPHSQALNPVMKVKHVAMTSWFEYGPTESRFDTSMAQLSHIEVLPQALEGQPTPNANWSPAVILTVRSYVPVDNTPYNQEQQSIVDRWELQERPEKLHPMFEQLSIGSGNSLPTGTRLRKLEPIIIPKVIISVHVMQLGKVICFGFSDGTVQYRDRYTMNEIYTEPSTDRIMSPIQVGFQFAEEKPCLQIAFSPTNCSLVQVCEDDSVLWNSMKFPSDDVGFLTQDRGQYSAIIAALSIAMSSAAIQTTNYDDILALARPFAEKHERFSYEWVMELVRILKVTVDYSEEAHHDSLVRNNNLQLCLSILNHLGFRGHFRPRTFGGKFAALALNIRNIVILITIASNTPVTLKQTLSPLDEHEVVDALAGCAKWSLDLLSWLMDCLFNLLDEPGFTAILNNQRQFADLTRYLQGRNNVALHLLLCSSTRGFLQAACRRLIHLDALSSRAMTFYETKAAVQNASDPTGAANRTPHPLYNAYQKMQRFTSSSLVKVADIDKLLTALSQEIRQAYQNSLPGISVQARQSNAGAQQQNPANDPAVKRAQMHCELSMLLATAPPPSFQAVLLNFFNKYVRAYRAQTDPARLFFADYSLLEVEDDETSLRRRRASRRYLDAFTRWELDAAGRLGQQTNGSASGSDSAEAITLDNFDTQWRRCVRCAAVMENVYPQRPGFTFVLGQQRKCACGGSWGLLHKGAMVS |
Length | 1009 |
Position | Tail |
Organism | Coniochaeta ligniaria NRRL 30616 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Coniochaetales> Coniochaetaceae> Coniochaeta.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.242 |
Instability index | 44.01 |
Isoelectric point | 6.71 |
Molecular weight | 112401.44 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP10986
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 531.70| 142| 528| 260| 402| 5
---------------------------------------------------------------------------
57- 171 (110.93/60.37) .............................ASASKQL...Q.....qrldelrsrgccqgIAWSKQGT....IAAISKGGRSIdLRfIR.cHPDNGTWQLSQPTPWNFG...AILPSCPIVHLAWAGQSSPE....L....AVIdfvgrVSIWSFSITLNRPYP........VR...KWD.
260- 402 (242.00/144.75) LENVNSSEDRITHASL..SSDRNALLVALATASKQL...KVVRVQ..............IQWGQQQTGDKQVPPHSQALNPV.MK.VK..HVAMTSWFEYGPTESRFDTSMAQLSHIEVLPQALEGQPTPN....ANWSpAVI.....LTVRSYVPVDNTPYNQEQQS..IVD...RWEL
786- 931 (178.77/101.82) LYNAYQKMQRFTSSSLvkVADIDKLLTALSQEIRQAyqnSLPGIS..............VQARQSNAGAQQQNP...ANDPA.VK.RAqmHCELSMLLATAPPPS.FQAVL..LNFFNKYVRAYRAQTDPArlffADYS...L.....LEVED....DETSLRRRRASrrYLDaftRWEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.68| 11| 495| 233| 243| 6
---------------------------------------------------------------------------
233- 243 (19.72/11.84) LLCVTTSGVLK
733- 743 (20.95/13.04) LLCSSTRGFLQ
---------------------------------------------------------------------------
|