<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10967

Description Uncharacterized protein
SequenceMANNSQPPGMQFRPVIQSQQGQPFVPMTSQQFGHAGHAIPSSNVVQSQQVQYSQPVQQLAPRPIQPGHPAPLSQAPMPYIQTSRPLTSASPHSQQMVSHLSNHMPGLAVSGAPPHPSYTFTPSYGQQQDNANALAQYQPPPQMLAPPAGQPWMSSVSQSASAVTPVQQGGVQSLDSTSTDARTSAPNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKITQQSTWSIPEELKLAREQAQKAVNQGVQSETTDASNAAVSSNATSTDANVAISNTSLTSNGIASSPASLPPIGAADPQQLISGSGTPVSHSIVTPASTGVEQSTVTMTITEPITVAGSSGAATDSLDSKVPSIVENQASQDFATSVTGASLQDIEESKRGVTGVGKINVTPPEEKADDDETLVYANKLEAKTAFKGLLESANVHSDWTWEQAMREIINDKRYNALKTPGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSIRWSKAISMFENDERFNAVEKQRDREDLFESYMVELERKEKEIAAEEHRQNVAEYRKFLESCDYVKVYSQWRKVQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEKKRIQKDRVHRGERKNRDAFCKLLEEHVAAGVLTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKEIFEDVAVELENQYHEDKTLVKDIIKTCKITVVSTSLFEDFKSAVLEEGSKTISEINLKLVYEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSQWEDCKPLFEETQEYRSIGDESYSREIFEQYITYLEEKAKEKERKREDEKAKKEKEKEEKEKRKEKDREREKEKSKERHKKVDTDSENQEVNDSHDYKEEKKKEKDKERKHRKRRQSSIEDVDSERDEKEESKKSRRHGSDRKKSRKHANSESDNESKHRRHKREHRDGSRKTGGHVELEDGELGDDGDI
Length990
PositionUnknown
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.06
Grand average of hydropathy-1.097
Instability index53.82
Isoelectric point5.95
Molecular weight112943.67
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10967
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     183.21|      38|      38|     857|     894|       1
---------------------------------------------------------------------------
  538-  580 (37.21/18.51)	.DERFNAVEKQRDREDlfESYmvelERKEKEI.AAEEHRQNVAEY
  857-  894 (62.53/36.95)	KEEKEKRKEKDREREK..EKS....KERHKKV.DTDSENQEVNDS
  898-  932 (48.91/27.03)	KEEK..KKEKDKERKH..RK......RRQSSIeDVDSERDEKEES
  940-  968 (34.56/16.58)	SDRKKSRKHANSESDN..ESK....HRRHKRE.HRD.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.48|      37|      38|     194|     230|       2
---------------------------------------------------------------------------
  194-  230 (70.11/44.86)	WQEHT............SADGRRYYYNKRTRQSSWEKPLELMSPIERAD
  235-  271 (65.00/41.02)	WKEFT............SSDGKKYYYNKITQQSTWSIPEELKLAREQAQ
  279-  327 (43.37/24.76)	QSETTdasnaavssnatSTDANVAISNTSLTSNGIASSPASLPPIGAAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     207.74|      45|      74|     736|     780|       3
---------------------------------------------------------------------------
  612-  639 (26.55/13.77)	...................LEKIDRLL....VFQDYI.RDLEKEEE....EKKRIQ
  657-  700 (40.62/25.78)	LLE...EHVAAGVLTAKTQWREYCLKVrdlpQYQAVASNTSGSTPK....E.....
  737-  780 (62.98/44.87)	.FE...DFKSAVLEEGSKTISEINLKL....VYEELLERAKEKEEK....EAKKRQ
  782-  806 (27.61/14.68)	LAD...DFT..............NLLY....TFKDITTSSQWEDCK..........
  808-  855 (49.97/33.76)	LFEetqEYRSIGDESYSREIFEQYIT......Y..LEEKAKEKERKredeKAKKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.49|      43|      46|       5|      50|       4
---------------------------------------------------------------------------
    5-   47 (80.80/43.10)	SQPPGMQFRPVIQSQQGQPFV...PMTSQQFGHAGHAIPSSNVVQS
   73-  112 (59.96/29.27)	SQAP.M...PYIQT..SRPLTsasPHSQQMVSHLSNHMPGLAVSGA
  138-  165 (38.73/17.83)	.QPPPQMLAP....PAGQPWM...SSVSQS...ASAVTP.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.14|      18|      18|     390|     407|       5
---------------------------------------------------------------------------
  369-  386 (25.82/15.92)	SSGAATDSLDSKVPSIVE
  390-  407 (27.16/17.14)	SQDFATSVTGASLQDIEE
  408-  425 (28.15/18.04)	SKRGVTGVGKINVTPPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.74|      17|      67|     514|     530|       7
---------------------------------------------------------------------------
  493-  518 (20.14/11.00)	RKKLEAEERRMKqkrareeftKMLEE
  519-  537 (25.60/16.12)	CKELTSSIRWSK.......aiSMFEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10967 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KERKREDEKAKKEKEKEEKEKRKEKDREREKEKSKERHKKVDTDSENQEVNDSHDYKEEKKKEKDKERKHRKRRQSSIEDVDSERDEKEESKKSRRHGSDRKKSRKHANSESDNESKHRRHKREHRDGSRKTGGHVELEDGELGDDGDI
2) MANNSQPPGMQFRPVIQSQQGQPFVPMTSQQFGHAGHAIPSSNVVQSQQVQYSQPVQQLAPRPIQPGHPAPLSQAPMPYIQTSRPLTSASPHSQQMVSHLSNHMPGLAVSGAPPHPSYTFTPSYGQQQDNANALAQYQPPPQMLAPPAGQPWMSSVSQSASAVTPVQQGGVQSLDSTSTDARTSAPNQQSLSDWQEHTSADGRRYYYNKRT
3) SIPEELKLAREQAQKAVNQGVQSETTDASNAAVSSNATSTDANVAISNTSL
4) SNGIASSPASLPPIGAADPQQLISGSGTPVSHSIVTPASTGVEQSTVTMTITEPITVAGSSGAA
842
1
258
310
990
211
308
373










Molecular Recognition Features






MoRF SequenceStartStop




1) ESKHRRHKREHRD
2) GHVELEDGEL
3) KSRKHA
4) MQFRPVI
5) YYYNKI
956
975
944
10
246
968
984
949
16
251