<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10967

Description Uncharacterized protein
SequenceMANNSQPPGMQFRPVIQSQQGQPFVPMTSQQFGHAGHAIPSSNVVQSQQVQYSQPVQQLAPRPIQPGHPAPLSQAPMPYIQTSRPLTSASPHSQQMVSHLSNHMPGLAVSGAPPHPSYTFTPSYGQQQDNANALAQYQPPPQMLAPPAGQPWMSSVSQSASAVTPVQQGGVQSLDSTSTDARTSAPNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKITQQSTWSIPEELKLAREQAQKAVNQGVQSETTDASNAAVSSNATSTDANVAISNTSLTSNGIASSPASLPPIGAADPQQLISGSGTPVSHSIVTPASTGVEQSTVTMTITEPITVAGSSGAATDSLDSKVPSIVENQASQDFATSVTGASLQDIEESKRGVTGVGKINVTPPEEKADDDETLVYANKLEAKTAFKGLLESANVHSDWTWEQAMREIINDKRYNALKTPGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSIRWSKAISMFENDERFNAVEKQRDREDLFESYMVELERKEKEIAAEEHRQNVAEYRKFLESCDYVKVYSQWRKVQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEKKRIQKDRVHRGERKNRDAFCKLLEEHVAAGVLTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKEIFEDVAVELENQYHEDKTLVKDIIKTCKITVVSTSLFEDFKSAVLEEGSKTISEINLKLVYEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSQWEDCKPLFEETQEYRSIGDESYSREIFEQYITYLEEKAKEKERKREDEKAKKEKEKEEKEKRKEKDREREKEKSKERHKKVDTDSENQEVNDSHDYKEEKKKEKDKERKHRKRRQSSIEDVDSERDEKEESKKSRRHGSDRKKSRKHANSESDNESKHRRHKREHRDGSRKTGGHVELEDGELGDDGDI
Length990
PositionUnknown
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.06
Grand average of hydropathy-1.097
Instability index53.82
Isoelectric point5.95
Molecular weight112943.67
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10967
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     183.21|      38|      38|     857|     894|       1
---------------------------------------------------------------------------
  538-  580 (37.21/18.51)	.DERFNAVEKQRDREDlfESYmvelERKEKEI.AAEEHRQNVAEY
  857-  894 (62.53/36.95)	KEEKEKRKEKDREREK..EKS....KERHKKV.DTDSENQEVNDS
  898-  932 (48.91/27.03)	KEEK..KKEKDKERKH..RK......RRQSSIeDVDSERDEKEES
  940-  968 (34.56/16.58)	SDRKKSRKHANSESDN..ESK....HRRHKRE.HRD.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.48|      37|      38|     194|     230|       2
---------------------------------------------------------------------------
  194-  230 (70.11/44.86)	WQEHT............SADGRRYYYNKRTRQSSWEKPLELMSPIERAD
  235-  271 (65.00/41.02)	WKEFT............SSDGKKYYYNKITQQSTWSIPEELKLAREQAQ
  279-  327 (43.37/24.76)	QSETTdasnaavssnatSTDANVAISNTSLTSNGIASSPASLPPIGAAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     207.74|      45|      74|     736|     780|       3
---------------------------------------------------------------------------
  612-  639 (26.55/13.77)	...................LEKIDRLL....VFQDYI.RDLEKEEE....EKKRIQ
  657-  700 (40.62/25.78)	LLE...EHVAAGVLTAKTQWREYCLKVrdlpQYQAVASNTSGSTPK....E.....
  737-  780 (62.98/44.87)	.FE...DFKSAVLEEGSKTISEINLKL....VYEELLERAKEKEEK....EAKKRQ
  782-  806 (27.61/14.68)	LAD...DFT..............NLLY....TFKDITTSSQWEDCK..........
  808-  855 (49.97/33.76)	LFEetqEYRSIGDESYSREIFEQYIT......Y..LEEKAKEKERKredeKAKKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.49|      43|      46|       5|      50|       4
---------------------------------------------------------------------------
    5-   47 (80.80/43.10)	SQPPGMQFRPVIQSQQGQPFV...PMTSQQFGHAGHAIPSSNVVQS
   73-  112 (59.96/29.27)	SQAP.M...PYIQT..SRPLTsasPHSQQMVSHLSNHMPGLAVSGA
  138-  165 (38.73/17.83)	.QPPPQMLAP....PAGQPWM...SSVSQS...ASAVTP.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.14|      18|      18|     390|     407|       5
---------------------------------------------------------------------------
  369-  386 (25.82/15.92)	SSGAATDSLDSKVPSIVE
  390-  407 (27.16/17.14)	SQDFATSVTGASLQDIEE
  408-  425 (28.15/18.04)	SKRGVTGVGKINVTPPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.74|      17|      67|     514|     530|       7
---------------------------------------------------------------------------
  493-  518 (20.14/11.00)	RKKLEAEERRMKqkrareeftKMLEE
  519-  537 (25.60/16.12)	CKELTSSIRWSK.......aiSMFEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10967 with Med35 domain of Kingdom Viridiplantae
Unable to open file!