<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP10962

Description Uncharacterized protein
SequenceMQTSLSSIQNNQQPNNVQQSQSMLPQHSQVTRQQQQHTSVIHKQQTSVTQQSILPQQQQQQLMGSQANATSMQHSPMLGSQNNGGDMQQPQRLLAQQNNLSNLQQQQLINQQNNLTNMHQQLGNNVSGLQPQQVLGAQAGNSGMQTSQHSAQVPQQTKVPMQQQNTSNLLASQAQQPQAPQQLLMPQIQSHPAQLQQQLGLQQQPNSLQRDMQQKLHASASLDSTAQTGQPNGDDWQEEVYQKIKTMKENYLPELNEMYQKVATKLQQHDSLSHQPKTDQLERLKVFKMMLERIITFLQVPKSNILPNFKEKMGSYEKQIINFINTNRPRKAMSSLQPGHLPPSHVHSMSQAQPQVTQSQSHENQMNSQLQTNMQGSVGTMQQNNSMASMQRNSMSGVSTTQQNMMNSMQPGTNIDSGQGNAMNSMQQVLVSSLQQNPVSAPQQPNINSLSSQGGVNVIQPNLNPIQPGSSMLQHMQLKQQQEQNMLQSQQFKQQYHQRQLIQRQQQLNQPTKQQLPAQLQTHQIQQLNQMNDVNDTKMRQEIGVKPGALQQHIISNHRSTYPHQPMKQENLFPVSSPQLLQTASPQMPQHSSPQVDQQNNLPYLTKAATPLQSANSPFVVPIPSPPLAPSMPRDSEKSFSGVSLLSNAANVGHQQTGGAAVPAQSLAIGTPGISASPILAEFSGPDIAHGNNALAATSGKSTVTEQPIERLIKVVQSMSSKALSAAVNDIGAVVSTNDRIAGSAPGNGSRVAVGEDLVAVTNCRLQARNFITQDGGSGTRKMKRCINATPLNVISSAGSMTDSIKLLTAFEASELESLMSTSIKKPRVEACHALLEEIKKVNQRLIDTVVDISDEDIDQTAAVIGAEGAEGTVVTCSYTAVALSPSLKSQYASSQMSPIQPLRVLVPTSYPNCSPIFLDKFPVETSKENEDLSMKARSRFSISLRGLSQPMSLGVIAKTWDTCARAVICEHAQKSGGGSFSSKHGSWEDCLTT
Length994
PositionTail
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.03
Grand average of hydropathy-0.636
Instability index60.92
Isoelectric point8.96
Molecular weight108746.05
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP10962
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     460.94|      67|      69|       9|      75|       3
---------------------------------------------------------------------------
    1-   65 (99.07/25.69)	......M...QTS.lssiQNNQQP..NNVQQSQSMLPQHSQVTRQQ.QQH..TSVIHKQ...Q..T....................SVTQQSILPQQ....QQQQLMGS
   66-  137 (74.96/17.69)	QANATSM...QHSpmlgsQNN..G..GDMQQPQRLLAQQNNLSNLQ.QQQ....LINQQ...NnlT....................NMHQQ..LGNNvsglQPQQVLGA
  138-  187 (61.18/13.11)	QAGNSGMqtsQHS....aQ................VPQQTKVPMQQ.QNT..SNLLASQ.............................AQQ...PQA....PQQLLMPQ
  189-  234 (56.79/11.66)	QSHPAQL...QQQ..lglQ..QQP..NSLQ.............RDM.QQK.....LH...............................ASASLDSTA....QTGQPNGD
  235-  315 (50.50/ 9.57)	DWQEEVY...QKI..ktmKENYLPelNEM.........YQKVATKL.QQH..DSLSHQP...K..TdqlerlkvfkmmleriitflQVPKSNILPNF....KEK..MGS
  453-  514 (69.64/15.92)	QG...........gvnviQPNLNP....IQPGSSML.QHMQLKQQQ.EQNmlQSQQFKQ...Q..Y....................H.QRQLIQRQQ....QLNQPTKQ
  515-  574 (48.79/ 9.00)	QLPAQLQ...THQ....iQQLNQM..NDVNDTK..MRQEIGVKPGAlQQH..IISNHRStypH..Q....................PMKQENLFP..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.64|      37|      42|     622|     663|       4
---------------------------------------------------------------------------
  575-  611 (47.42/22.95)	.VSSPQLlqtaSPQMPQHSS...PQV...DQQNNLPYL..TKAATP
  622-  663 (57.45/41.23)	PIPSPPL....APSMPRDSEksFSGVsllSNAANVGHQQTGGAAVP
  668-  699 (50.76/25.14)	AIGTPGI....SAS.PILAE..FSG.......PDIAHGNNALAATS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.08|      13|      16|     419|     434|       5
---------------------------------------------------------------------------
  364-  376 (21.76/ 8.37)	NQMNSQLQ...TNMQG
  421-  436 (19.32/12.94)	NAMNSMQQvlvSSLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.31|      16|      16|     898|     913|       6
---------------------------------------------------------------------------
  898-  913 (30.25/19.19)	SPIQPLRVLVPTSYPN
  915-  930 (29.06/18.14)	SPIFLDKFPVETSKEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.68|      14|      24|     726|     741|       7
---------------------------------------------------------------------------
  726-  741 (20.10/17.77)	AAVN........DIGAVvsTNDRI
  745-  766 (19.58/10.49)	APGNgsrvavgeDLVAV..TNCRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.92|      22|      22|     772|     793|      10
---------------------------------------------------------------------------
  772-  793 (39.12/29.80)	ITQDGGSGTRKMK..RCINATPLN
  794-  817 (29.80/20.67)	VISSAGSMTDSIKllTAFEASELE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP10962 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ANSPFVVPIPSPPLAPSMPRDSEKSFSGVSLLSNA
2) EKQIINFINTNRPRKAMSSLQPGHLPPSHVHSMSQAQPQVTQSQSHENQMNSQLQTNMQGSVGTMQQNNSMASMQRNSMSGVSTTQQNMMNSMQPGTNIDSGQGNAMNSMQQVLVSSLQQNPVSAPQQPNINSLSSQGGVNVIQPNLNPIQPGSSMLQHMQLKQQQEQNMLQSQQFKQQYHQRQLIQRQQQLNQPTKQQLPAQLQTHQIQQLNQMNDVNDTKMRQEIGVKPGALQQHIISNHRSTYPHQPMKQENLFPVSSPQLLQTASPQMPQHSSPQVDQQNNLPYLTKAA
3) MQTSLSSIQNNQQPNNVQQSQSMLPQHSQVTRQQQQHTSVIHKQQTSVTQQSILPQQQQQQLMGSQANATSMQHSPMLGSQNNGGDMQQPQRLLAQQNNLSNLQQQQLINQQNNLTNMHQQLGNNVSGLQPQQVLGAQAGNSGMQTSQHSAQVPQQTKVPMQQQNTSNLLASQAQQPQAPQQLLMPQIQSHPAQLQQQLGLQQQPNSLQRDMQQKLHASASLDSTAQTGQPNGDDWQEEVYQK
615
317
1
649
609
243










Molecular Recognition Features






MoRF SequenceStartStop




NANANA